# Load needed libraries
library(raster)
## Loading required package: sp
library(dplyr)
##
## Attaching package: 'dplyr'
## The following objects are masked from 'package:raster':
##
## intersect, select, union
## The following objects are masked from 'package:stats':
##
## filter, lag
## The following objects are masked from 'package:base':
##
## intersect, setdiff, setequal, union
library(ggplot2)
library(tidyr)
##
## Attaching package: 'tidyr'
## The following object is masked from 'package:raster':
##
## extract
library(vegan)
## Loading required package: permute
## Loading required package: lattice
## This is vegan 2.5-3
### Load Zonation outputs and proxies of gen div
# Path to rasters
myrasters<-c("../data/spatial/Zonation_output/00_MDP_PDG_caz.rank.compressed.tif", # Zonation output proxis div gen + species (n=221)
"../data/spatial/Zonation_output/03_caz.rank.compressed.tif", # Zonation output Zonas Vida + species
"../data/spatial/Zonation_output/00_MDP_caz.rank.compressed.tif", # Zonation output with species only (n=119)
"../data/spatial/Zonation_output/01.rank.compressed.tif", # Zonation output species vs proxies (n=12240)
"../data/spatial/Zonation_output/00_MDP_ADMU.ADMU.redistributed.rank.compressed.tif", # Zonation output with species, incorporating proxies as "administrative units" (n=119)
"../data/spatial/areasProxyDivGen/PDG.tif") #Proxies div gen
# Stack rasters and add nicer names
CWR<-stack(myrasters)
names(CWR)<-c("ZonationProxiDG", "ZonationZV", "ZonationSPP", "ZonationProxiDGvsSPP", "ZonationSPP_ADMU", "ProxiesDivGen")
#### Data description #####
ZT=0.10 #Zonation threshold
### plots
#colors for proxies div gen
mycols<-c("grey", "#668325", "#9343c1", "#61b928", "#bc6cec", "#56cd5e", "#4667e6", "#bab71b", "#704dc1", "#b5cb3e", "#4c4fb8", "#83b124", "#5e7ef2", "#38a435", "#cc3ca6", "#3fcb85", "#ec49a6", "#86ca62", "#e471de", "#5d9d38", "#9b76e8", "#9ea122", "#a13ca0", "#3da35c", "#e53283", "#2b7c2c", "#b063c4", "#c7bb43", "#3b65c1", "#e2b438", "#628ceb", "#e69128", "#509be7", "#e0422f", "#34c7dd", "#c62a33", "#57d2b9", "#d1204a", "#57c597", "#ef3d76", "#56cdc9", "#ec4b5f", "#2ba198", "#e2672a", "#2baad3", "#b33f1d", "#6bbff0", "#ae6314", "#7f68c4", "#90ac42", "#774598", "#c0bd59", "#b58be8", "#4e6313", "#dd80d3", "#87be71", "#b62a7c", "#3b9065", "#c22a60", "#71b588", "#e75687", "#326a38", "#e46aad", "#628848", "#ad498c", "#b2c06d", "#535a99", "#c89d3c", "#3176ae", "#e97150", "#549bce", "#ca783f", "#7b7ec0", "#927b1f", "#a6a5e8", "#9a9c49", "#a161a4", "#a6b174", "#7d4f8c", "#e99b5c", "#206e54", "#b1394e", "#505e25", "#dc9ce0", "#786e30", "#ba7eb8", "#90652d", "#de93ba", "#caa569", "#9b3a66", "#e99d7a", "#8c4e6c", "#914c27", "#f288aa", "#b7443b", "#c6648b", "#bc7257", "#dd6e81", "#a7514b", "#e49190", "#a04f59", "#e6736d")
plot(CWR$ProxiesDivGen, main= "Areas Proxi of Genetic Diversity", col=mycols, legend=FALSE)
plot(CWR$ZonationSPP>=(1-ZT), legend=FALSE, main= "Zonation output Spp models")
plot(CWR$ZonationZV>=(1-ZT), legend=FALSE, main= "Zonation output Life Zones")
plot(CWR$ZonationProxiDG>=(1-ZT), legend=FALSE, main= "Zonation output Proxies Genetic Diversity")
plot(CWR$ZonationProxiDGvsSPP>=(1-ZT), legend=FALSE, main= "Zonation output Proxies Genetic Diversity vs spp")
plot(CWR$ZonationSPP_ADMU>=(1-ZT), legend=FALSE, main= "Zonation output Spp models, Proxies as ADMU")
### Describe proxies div gen
table(getValues(CWR$ProxiesDivGen))
##
## 1 2 3 4 5 6 7 8 9 10
## 69075 5508 122376 11448 77525 14616 16525 23248 3783 39718
## 11 12 13 14 15 16 17 18 19 20
## 6131 17327 4160 3445 8525 550 28560 10528 20488 4717
## 21 22 23 24 25 26 27 28 29 30
## 7153 8472 17042 6067 10256 3075 435 2897 1108 505
## 31 32 33 34 35 36 37 38 39 40
## 66 24703 38759 29076 97427 15930 35384 6368 3796 22680
## 41 42 43 44 45 46 47 48 49 50
## 12408 8496 16262 30487 15314 38427 17689 13662 11341 1245
## 51 52 53 54 55 56 57 58 59 60
## 28125 21130 29801 629 5515 11856 29465 1700 7397 2440
## 61 62 63 64 65 66 67 68 69 70
## 20 471 102 76 138 389 1229 22876 184304 103988
## 71 72 73 74 75 76 77 78 79 80
## 2746 39733 47451 38990 46992 49711 67153 11564 1924 50236
## 81 82 83 84 85 86 87 88 89 90
## 61648 185521 10552 6964 174 108081 12927 63816 231 7696
## 91 92 93 94 95 96 97 98 99 100
## 7876 20341 37323 698 1084 1783 1123 15275 6259 1097
## 101 102
## 2558 726
##### Analyses per sp #####
# Create where to store results for all spp
sol_tidy_spp<-character(0) # area of proxies of div gen for each zonation solution
sol_prop_spp<-character(0) # proportion of proxi of div gen for each zolnation solution in relation to its area in the sp distribution
sols_summary_spp<-character(0) # diversity indexes and mean of proportion
# Remember zonation threshold used:
ZT
## [1] 0.1
# List of spp
spp<-list.files("../data/spatial/modelos_darwin_all/")
spp
## [1] "Capsicum_annuum_glabriusculum.tif"
## [2] "Capsicum_frutescens.tif"
## [3] "Capsicum_lanceolatum.tif"
## [4] "Capsicum_rhomboideum.tif"
## [5] "Cucurbita_argyrosperma_var_sororia.tif"
## [6] "Cucurbita_cordata.tif"
## [7] "Cucurbita_digitata.tif"
## [8] "Cucurbita_foetidissima.tif"
## [9] "Cucurbita_lundelliana.tif"
## [10] "Cucurbita_okeechobeensis_martinezii.tif"
## [11] "Cucurbita_palmata.tif"
## [12] "Cucurbita_pedatifolia.tif"
## [13] "Cucurbita_pepo_fraterna.tif"
## [14] "Cucurbita_radicans.tif"
## [15] "Gossypium_aridum.tif"
## [16] "Gossypium_davidsonii.tif"
## [17] "Gossypium_gossypioides.tif"
## [18] "Gossypium_harknesii.tif"
## [19] "Gossypium_hirsutum.tif"
## [20] "Gossypium_thurberi.tif"
## [21] "Persea_albida.tif"
## [22] "Persea_americana.tif"
## [23] "Persea_caerulea.tif"
## [24] "Persea_donnell_smithii.tif"
## [25] "Persea_hintonii.tif"
## [26] "Persea_liebmannii.tif"
## [27] "Persea_longipes.tif"
## [28] "Persea_pallescens.tif"
## [29] "Persea_podadenia.tif"
## [30] "Persea_purpusii.tif"
## [31] "Persea_schiedeana.tif"
## [32] "Persea_vesticula.tif"
## [33] "Phaseolus_acutifolius_acutifolius.tif"
## [34] "Phaseolus_acutifolius_tenuifolius.tif"
## [35] "Phaseolus_angustissimus.tif"
## [36] "Phaseolus_chiapasanus.tif"
## [37] "Phaseolus_coccineus.tif"
## [38] "Phaseolus_filiformis.tif"
## [39] "Phaseolus_glabellus.tif"
## [40] "Phaseolus_jaliscanus.tif"
## [41] "Phaseolus_leptostachyus.tif"
## [42] "Phaseolus_lunatus_silvester.tif"
## [43] "Phaseolus_maculatus.tif"
## [44] "Phaseolus_micranthus.tif"
## [45] "Phaseolus_microcarpus.tif"
## [46] "Phaseolus_parvifolius.tif"
## [47] "Phaseolus_parvulus.tif"
## [48] "Phaseolus_pauciflorus.tif"
## [49] "Phaseolus_pedicellatus.tif"
## [50] "Phaseolus_perplexus.tif"
## [51] "Phaseolus_pluriflorus.tif"
## [52] "Phaseolus_ritensis.tif"
## [53] "Phaseolus_scabrellus.tif"
## [54] "Phaseolus_vulgarisl.tif"
## [55] "Physalis_acutifolia.tif"
## [56] "Physalis_angulata.tif"
## [57] "Physalis_angustiphysa.tif"
## [58] "Physalis_campechiana.tif"
## [59] "Physalis_caudella.tif"
## [60] "Physalis_chenopodifolia.tif"
## [61] "Physalis_cinerascens.tif"
## [62] "Physalis_cordata.tif"
## [63] "Physalis_coztomatl.tif"
## [64] "Physalis_crassifolia.tif"
## [65] "Physalis_glutinosa.tif"
## [66] "Physalis_gracilis.tif"
## [67] "Physalis_hederifolia.tif"
## [68] "Physalis_heterophylla.tif"
## [69] "Physalis_ignota.tif"
## [70] "Physalis_ixocarpa.tif"
## [71] "Physalis_lagascae.tif"
## [72] "Physalis_leptophylla.tif"
## [73] "Physalis_melanocystis.tif"
## [74] "Physalis_minuta.tif"
## [75] "Physalis_nicandroides.tif"
## [76] "Physalis_orizabae.tif"
## [77] "Physalis_patula.tif"
## [78] "Physalis_philadelphica.tif"
## [79] "Physalis_pruinosa.tif"
## [80] "Physalis_pubescens.tif"
## [81] "Physalis_solanaceus.tif"
## [82] "Physalis_sordida.tif"
## [83] "Physalis_sulphurea.tif"
## [84] "Physalis_virginiana.tif"
## [85] "Physalis_volubilis.tif"
## [86] "Physalis_waterfallii.tif"
## [87] "Solanum_agrimonifolium.tif"
## [88] "Solanum_bulbocastanum.tif"
## [89] "Solanum_cardiophyllum.tif"
## [90] "Solanum_clarum.tif"
## [91] "Solanum_demissum.tif"
## [92] "Solanum_ehrenbergii.tif"
## [93] "Solanum_endiense.tif"
## [94] "Solanum_hjertingii.tif"
## [95] "Solanum_hougasii.tif"
## [96] "Solanum_iopetalum.tif"
## [97] "Solanum_morelliforme.tif"
## [98] "Solanum_oxycarpum.tif"
## [99] "Solanum_pinnatisectum.tif"
## [100] "Solanum_polyadenium.tif"
## [101] "Solanum_schenckii.tif"
## [102] "Solanum_stenophyllidium.tif"
## [103] "Solanum_stoloniferum.tif"
## [104] "Solanum_trifidum.tif"
## [105] "Solanum_verrucosum.tif"
## [106] "Tripsacum_lanceolatum.tif"
## [107] "Tripsacum_latifolium.tif"
## [108] "Tripsacum_pilosum.tif"
## [109] "Vanilla_odorata.tif"
## [110] "Vanilla_pompona.tif"
## [111] "Zea_diploperennis.tif"
## [112] "Zea_luxurians.tif"
## [113] "Zea_mays_huehuetenango.tif"
## [114] "Zea_mays_mexicana_race_chalco.tif"
## [115] "Zea_mays_mexicana_race_durango.tif"
## [116] "Zea_mays_mexicana_race_mesa_central.tif"
## [117] "Zea_mays_mexicana_race_nobogame.tif"
## [118] "Zea_mays_parviglumis.tif"
## [119] "Zea_perennis.tif"
for (i in 1:length(spp)){
spname<-gsub(".tif", "", spp[i])
spname<-gsub("_", " ", spname)
print(spname)
# add to stacks of raster the raster with the sp distribution model
CWR_sp<-stack(CWR, paste0("../data/spatial/modelos_darwin_all/", spp[i])) # sp model
names(CWR_sp)[7]<-"ENM_sp"
# plot
plot(CWR_sp$ENM_sp, legend=FALSE, main= paste(spname, "distribution"))
# Define areas with Proxies of DivGen for that sp
# this works because the ENM_sp is coded 1= sp presence 0= absence
sp_ProxiesDivGen<- CWR_sp$ProxiesDivGen * CWR_sp$ENM_sp
# write to raster
writeRaster(sp_ProxiesDivGen, format= "GTiff", file= paste0("../data/spatial/areasProxyDivGen/crop_to_sp/", "PDG_", spp[i]), overwrite=TRUE)
############## Quantify overlaps
### convert to rasters to points to have a "df of overlaps"
CWR_overlaps<-as.data.frame(rasterToPoints(CWR_sp))
##### calcs for each solution
##### 1) Proxies of Div Gen in base ENM of sp
## subset
x<-dplyr::filter(CWR_overlaps, ENM_sp==1) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# save results in df
sol_base<-as.data.frame(table(x$ProxiesDivGen))
names(sol_base)<-c("ProxiDivGen", "ENM_sp")
### plots
## bar plot
# ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste("Areas Proxi of Genetic Diversity for", spp[i]))
##### 2) CWRsp + Zonation spp models
### calcs
## subet
x<-dplyr::filter(CWR_overlaps, ENM_sp==1, ZonationSPP>=(1-ZT)) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# Save to common data frame
sol_ZSPP<-as.data.frame(table(x$ProxiesDivGen))
names(sol_ZSPP)<-c("ProxiDivGen", "ZonationSPP")
## bar plot
# ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste(spname,"conserved under ZonationSPP at", ZT))
##### 3) CWRsp + Zonation Zonas de vida
### calcs
## subet
x<-dplyr::filter(CWR_overlaps, ENM_sp==1, ZonationZV>=(1-ZT)) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# Save to common data frame
sol_ZZV<-as.data.frame(table(x$ProxiesDivGen))
names(sol_ZZV)<-c("ProxiDivGen", "ZonationZV")
## bar plot
# ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste(spname, "conserved under ZonationZV at", ZT))
##### 4) CWRsp + Zonation Zonas Proxies Div Gen
### calcs
## subet
x<-dplyr::filter(CWR_overlaps, ENM_sp==1, ZonationProxiDG>=(1-ZT)) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# Save to common data frame
sol_ZProxiDG<-as.data.frame(table(x$ProxiesDivGen))
names(sol_ZProxiDG)<-c("ProxiDivGen", "ZonationProxiDG")
## bar plot
# ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste(spname, "conserved under ZonationProxiDivGen at", ZT))
##### 5) CWRsp + Zonation Zonas Proxies Div Gen vs SPP
### calcs
## subet
x<-dplyr::filter(CWR_overlaps, ENM_sp==1, ZonationProxiDGvsSPP>=(1-ZT)) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# Save to common data frame
sol_ZProxiDGvsSPP<-as.data.frame(table(x$ProxiesDivGen))
names(sol_ZProxiDGvsSPP)<-c("ProxiDivGen", "ZonationProxiDGvsSPP")
## bar plot
#ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste(spname, "conserved under ZonationProxiDivGenvsSPP at", ZT))
##### 6) CWRsp + Zonation spp models + Proxies Div Gen as administrative units
### calcs
## subet
x<-dplyr::filter(CWR_overlaps, ENM_sp==1, ZonationSPP_ADMU>=(1-ZT)) %>% arrange(., ProxiesDivGen)
x$ProxiesDivGen<-as.character(x$ProxiesDivGen)
# Save to common data frame
sol_ZSPP_ADMU<-as.data.frame(table(x$ProxiesDivGen))
names(sol_ZSPP_ADMU)<-c("ProxiDivGen", "ZonationSPP_ADMU")
## bar plot
# ggplot(x, aes(ProxiesDivGen)) + geom_bar() + ggtitle(paste(spname, "conserved under ZonationSPP_ADMU at", ZT))
####### Analyse results together
### ALL
## Prepare data
# Join all solutions
sol_all<-left_join(sol_base, sol_ZSPP) %>% left_join(., sol_ZZV) %>% left_join(., sol_ZProxiDG) %>% left_join(., sol_ZProxiDGvsSPP) %>% left_join(., sol_ZSPP_ADMU) %>%
mutate_all(funs(replace(., is.na(.), 0))) # NAs are actually 0s
head(sol_all)
# gather into tidy df
sol_tidy<-gather(sol_all, Solution, Freq, -ProxiDivGen)
head(sol_tidy)
## Plot
#print(ggplot(sol_tidy, aes(ProxiDivGen, Freq)) + geom_col(aes(fill=Solution)) + ggtitle(paste(spname, "at Zonation threshold", ZT)))
print(ggplot(sol_tidy, aes(x=ProxiDivGen, y= Freq, fill=Solution)) + geom_col(position="dodge") + ggtitle(paste(spname, "at Zonation threshold", ZT)))
#print(ggplot(sol_tidy, aes(x=ProxiDivGen, y= Freq, fill=Solution)) + geom_col(position="fill") + ggtitle(paste(spname, "at Zonation threshold", ZT)))
# save results with the rest of the spp
sol_tidy$sp<-spname
sol_tidy_spp<-rbind(sol_tidy_spp, sol_tidy)
## Estimate Proportion of Zones Proxies Div Gen under conservation for each Zonation solution
# estimate proportion
sol_prop<-mutate(sol_all,
ZonationSPP=ZonationSPP/ENM_sp,
ZonationZV=ZonationZV/ENM_sp,
ZonationProxiDG=ZonationProxiDG/ENM_sp,
ZonationProxiDGvsSPP=ZonationProxiDGvsSPP/ENM_sp,
ZonationSPP_ADMU=ZonationSPP_ADMU/ENM_sp)
head(sol_prop)
# tidy
sol_prop<-gather(sol_prop, Solution, Proportion_ProxiDG, -ProxiDivGen, -ENM_sp)
tail(sol_prop)
# save results with the rest of the spp
sol_prop$sp<-spname
sol_prop<-as.data.frame(sol_prop)
sol_prop_spp<-rbind(sol_prop_spp, sol_prop)
## make summary of proportion and area
#prop
myprop<-group_by(sol_prop, Solution) %>%
summarise(., mean.prop = mean(Proportion_ProxiDG), median.prop=median(Proportion_ProxiDG))
#area
tot.area.sp<-sum(sol_all$ENM_sp)
myarea<-sol_tidy %>%
group_by(., Solution) %>% summarise(., Area=sum(Freq)) %>%
mutate(., Prop_to_AreaSP=Area/tot.area.sp)
sol_prop_summary<-left_join(myarea, myprop, by="Solution")
sol_prop_summary<-as.data.frame(sol_prop_summary)
### Estimate Simpson diversity index
## we need an abundance matrix with species (ProxisDivGen in this case) in columns
# and abundance by treatment (Zonation output in this case) in rows. Therefore:
# transpose data to produce abundace matrix as expected by vegan
row.names(sol_all)<-sol_all[,1]
abundance.matrix<-t(sol_all[, 2:7])
class(abundance.matrix)
### Estimate Diversity Indices
indices.div<-data.frame("Solution"=colnames(sol_all[2:7]))
# Richness
indices.div$Richness<-rowSums(abundance.matrix>0)
# Shannon
indices.div$shannon<-diversity(abundance.matrix, index="shannon") # shannon is default
# Simpson
indices.div$simpson<-diversity(abundance.matrix, index="simpson")
#### Distance among conserving the whole distribution of the sp ("optimun scenario possible") and Zonation solutions
sol_dist<-data.frame(Solution=c("ENM_sp", "ZonationSPP", "ZonationZV", "ZonationProxiDG" ,"ZonationProxiDGvsSPP" ,"ZonationSPP_ADMU"),
Dist.to.Optimun=c(as.vector(dist(rbind(sol_all$ENM_sp, sol_all$ENM_sp))),
as.vector(dist(rbind(sol_all$ENM_sp, sol_all$ZonationSPP))),
as.vector(dist(rbind(sol_all$ENM_sp,sol_all$ ZonationZV))),
as.vector(dist(rbind(sol_all$ENM_sp, sol_all$ZonationProxiDG))),
as.vector(dist(rbind(sol_all$ENM_sp, sol_all$ZonationProxiDGvsSPP))),
as.vector(dist(rbind(sol_all$ENM_sp, sol_all$ZonationSPP_ADMU)))))
### join summary results together
sols_summary<-left_join(indices.div, sol_prop_summary, "Solution") %>% left_join(., sol_dist, "Solution")
print(sols_summary)
### save with the rest of the spp
sols_summary$sp<-spname
sols_summary_spp<-rbind(sols_summary_spp, sols_summary)
}
## [1] "Capsicum annuum glabriusculum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 64 3.216956 0.9341559 473887 1.0000000
## 2 ZonationSPP 57 3.183124 0.9426602 57246 0.1208010
## 3 ZonationZV 56 2.977902 0.9277750 61156 0.1290519
## 4 ZonationProxiDG 59 3.601769 0.9690824 70781 0.1493626
## 5 ZonationProxiDGvsSPP 64 3.771706 0.9735631 65715 0.1386723
## 6 ZonationSPP_ADMU 61 3.202893 0.9334670 51178 0.1079962
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2337136 0.10629199 113743.9
## 3 0.2528522 0.09174691 113795.0
## 4 0.3699246 0.20990318 113614.4
## 5 0.5070655 0.36755490 113899.3
## 6 0.1663593 0.10062029 108847.3
## [1] "Capsicum frutescens"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 61 3.083087 0.9296896 452533 1.0000000
## 2 ZonationSPP 56 3.140053 0.9442162 62403 0.1378971
## 3 ZonationZV 50 2.925797 0.9246275 68034 0.1503404
## 4 ZonationProxiDG 54 3.529299 0.9674442 68589 0.1515668
## 5 ZonationProxiDGvsSPP 61 3.667893 0.9697897 63784 0.1409488
## 6 ZonationSPP_ADMU 58 3.111712 0.9287240 48470 0.1071082
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3002681 0.14527931 111990.2
## 3 0.2995288 0.11247224 111554.3
## 4 0.4382082 0.25944987 112101.5
## 5 0.5632348 0.46447368 112189.2
## 6 0.2130706 0.09986421 107540.9
## [1] "Capsicum lanceolatum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 27 2.202424 0.8494695 36419 1.0000000
## 2 ZonationSPP 25 2.121480 0.8238560 21944 0.6025426
## 3 ZonationZV 24 2.080342 0.8284510 20080 0.5513606
## 4 ZonationProxiDG 25 2.443394 0.8869061 13397 0.3678574
## 5 ZonationProxiDGvsSPP 27 2.644247 0.9105875 13371 0.3671435
## 6 ZonationSPP_ADMU 26 2.209219 0.8428302 8391 0.2304017
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.6299071 0.6505469 6758.678
## 3 0.5975927 0.5861244 7429.823
## 4 0.6324779 0.6360656 10567.049
## 5 0.8188566 1.0000000 10641.585
## 6 0.3836902 0.2330407 11099.185
## [1] "Capsicum rhomboideum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 71 3.507281 0.9526507 447506 1.0000000
## 2 ZonationSPP 66 3.364989 0.9508785 69181 0.1545923
## 3 ZonationZV 63 3.287180 0.9510323 58357 0.1304050
## 4 ZonationProxiDG 65 3.784083 0.9741076 77054 0.1721854
## 5 ZonationProxiDGvsSPP 71 3.941199 0.9771656 86087 0.1923706
## 6 ZonationSPP_ADMU 70 3.428587 0.9428253 56747 0.1268072
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2526916 0.1375691 86368.56
## 3 0.2385075 0.1008996 88323.02
## 4 0.3832598 0.2558323 88709.74
## 5 0.4606457 0.3654661 87071.29
## 6 0.1790146 0.1202470 84722.05
## [1] "Cucurbita argyrosperma var sororia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 60 3.363551 0.9567797 397607 1.00000000
## 2 ZonationSPP 52 3.028634 0.9310186 44352 0.11154733
## 3 ZonationZV 53 2.937308 0.9248322 38397 0.09657023
## 4 ZonationProxiDG 50 3.487563 0.9666728 68197 0.17151861
## 5 ZonationProxiDGvsSPP 60 3.644269 0.9704212 67742 0.17037426
## 6 ZonationSPP_ADMU 60 3.340618 0.9531648 34208 0.08603470
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1836882 0.07829714 75197.44
## 3 0.1922179 0.06554039 76447.04
## 4 0.2985120 0.14642710 73313.74
## 5 0.5371206 0.39055025 72918.20
## 6 0.2060649 0.10004308 75838.38
## [1] "Cucurbita cordata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 8 1.508563 0.7280235 105035 1.00000000
## 2 ZonationSPP 7 1.357728 0.6808541 14734 0.14027705
## 3 ZonationZV 8 1.434693 0.7285555 21446 0.20417956
## 4 ZonationProxiDG 8 1.705914 0.7918314 9505 0.09049364
## 5 ZonationProxiDGvsSPP 8 1.851607 0.8246003 5520 0.05255391
## 6 ZonationSPP_ADMU 8 1.425816 0.7226389 12204 0.11618984
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1491582 0.11232198 48717.07
## 3 0.3792826 0.25213003 44374.42
## 4 0.3175755 0.10484518 50602.31
## 5 0.2612351 0.07401138 52615.68
## 6 0.2182500 0.10381353 48925.90
## [1] "Cucurbita digitata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 24 2.421651 0.8918358 327643 1.00000000
## 2 ZonationSPP 16 2.171328 0.8712642 23570 0.07193805
## 3 ZonationZV 20 2.365342 0.8769767 31931 0.09745668
## 4 ZonationProxiDG 20 2.529114 0.9091445 18404 0.05617089
## 5 ZonationProxiDGvsSPP 24 2.817986 0.9314281 15139 0.04620578
## 6 ZonationSPP_ADMU 22 2.277847 0.8714981 39089 0.11930363
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.09401804 0.04390416 100831.81
## 3 0.27571899 0.10448782 99610.51
## 4 0.25169908 0.06117580 103471.90
## 5 0.39574227 0.11463026 104307.77
## 6 0.20901878 0.12389150 94808.45
## [1] "Cucurbita foetidissima"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 57 2.668251 0.9049909 972303 1.00000000
## 2 ZonationSPP 52 2.909410 0.9331374 62707 0.06449327
## 3 ZonationZV 49 2.806474 0.9130177 49464 0.05087303
## 4 ZonationProxiDG 49 3.284497 0.9560283 41767 0.04295677
## 5 ZonationProxiDGvsSPP 57 3.441321 0.9577946 60182 0.06189634
## 6 ZonationSPP_ADMU 54 2.754738 0.9110102 102332 0.10524703
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2042825 0.13255814 289676.5
## 3 0.2686301 0.09617995 291283.7
## 4 0.3115660 0.07340882 293004.9
## 5 0.5615915 0.59909910 288914.8
## 6 0.2205062 0.10656168 269832.3
## [1] "Cucurbita lundelliana"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 9 1.2588921 0.6558438 120654 1.00000000
## 2 ZonationSPP 6 1.3833072 0.7192405 11447 0.09487460
## 3 ZonationZV 6 0.5593527 0.3053042 11582 0.09599350
## 4 ZonationProxiDG 5 1.5934200 0.7940932 12593 0.10437283
## 5 ZonationProxiDGvsSPP 9 1.8402480 0.8164955 6565 0.05441179
## 6 ZonationSPP_ADMU 9 1.2214055 0.6107688 16864 0.13977158
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1610484 0.0356077391 66796.52
## 3 0.2686484 0.0008238202 66144.65
## 4 0.1726861 0.0478724332 66248.25
## 5 0.5062280 0.2965779468 68668.55
## 6 0.2301945 0.1667509901 60511.65
## [1] "Cucurbita okeechobeensis martinezii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 37 2.654612 0.8989125 92128 1.0000000
## 2 ZonationSPP 29 2.408378 0.8748481 23632 0.2565127
## 3 ZonationZV 28 2.359903 0.8837924 18633 0.2022512
## 4 ZonationProxiDG 26 2.582206 0.9033637 14213 0.1542745
## 5 ZonationProxiDGvsSPP 37 3.126115 0.9462084 21829 0.2369421
## 6 ZonationSPP_ADMU 36 2.657258 0.9061560 16639 0.1806074
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2751324 0.14921616 22947.43
## 3 0.3028139 0.07242668 25664.07
## 4 0.2815016 0.11772316 26791.62
## 5 0.6522905 0.72222222 24959.17
## 6 0.3038849 0.14612676 24640.06
## [1] "Cucurbita palmata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 11 1.722995 0.7917891 95699 1.00000000
## 2 ZonationSPP 9 1.532829 0.7553680 11709 0.12235238
## 3 ZonationZV 8 1.353297 0.6773688 11727 0.12254047
## 4 ZonationProxiDG 9 1.689639 0.7889201 8059 0.08421196
## 5 ZonationProxiDGvsSPP 11 2.019555 0.8597888 6093 0.06366838
## 6 ZonationSPP_ADMU 11 1.597371 0.7572322 10143 0.10598857
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1906258 0.08912656 38575.45
## 3 0.2394406 0.07070982 39351.78
## 4 0.3066130 0.05279732 40762.81
## 5 0.3968000 0.16127278 41683.50
## 6 0.3135107 0.13511029 39780.21
## [1] "Cucurbita pedolia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 41 2.325366 0.8451722 116454 1.00000000
## 2 ZonationSPP 35 2.383402 0.8642605 15924 0.13674069
## 3 ZonationZV 34 2.364658 0.8447372 11615 0.09973895
## 4 ZonationProxiDG 35 2.530731 0.8979664 15865 0.13623405
## 5 ZonationProxiDGvsSPP 41 3.082615 0.9418721 20735 0.17805314
## 6 ZonationSPP_ADMU 39 2.177198 0.8341130 16039 0.13772820
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2745555 0.13734298 41064.55
## 3 0.2842636 0.14033045 42402.51
## 4 0.3373780 0.09713024 42706.10
## 5 0.7049005 0.91255962 41742.06
## 6 0.2927956 0.11830443 40543.76
## [1] "Cucurbita pepo fraterna"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 14 1.523031 0.6649710 55165 1.00000000
## 2 ZonationSPP 13 1.801460 0.7904401 14756 0.26748844
## 3 ZonationZV 13 1.767151 0.7892158 11192 0.20288226
## 4 ZonationProxiDG 12 1.581148 0.7282697 4869 0.08826249
## 5 ZonationProxiDGvsSPP 14 2.154054 0.8626965 6789 0.12306716
## 6 ZonationSPP_ADMU 14 1.419635 0.6124053 16777 0.30412399
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.5065297 0.4113230 25801.41
## 3 0.4030893 0.2348452 27496.95
## 4 0.3128970 0.1878900 30515.72
## 5 0.5666447 0.5351751 30026.50
## 6 0.4852841 0.3591302 21797.07
## [1] "Cucurbita radicans"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 26 2.038032 0.8215677 118498 1.00000000
## 2 ZonationSPP 25 1.920057 0.8131564 31638 0.26699185
## 3 ZonationZV 18 1.854471 0.8090279 25022 0.21115968
## 4 ZonationProxiDG 20 2.158909 0.8460258 10750 0.09071883
## 5 ZonationProxiDGvsSPP 26 2.642752 0.9085519 18883 0.15935290
## 6 ZonationSPP_ADMU 24 2.151307 0.8479341 12322 0.10398488
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2866777 0.20456731 37997.99
## 3 0.1844574 0.05094383 40737.91
## 4 0.2781441 0.07255373 47989.23
## 5 0.6935150 0.89444473 46180.80
## 6 0.2568920 0.10745039 45316.44
## [1] "Gossypium aridum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 54 3.176943 0.9458373 334462 1.00000000
## 2 ZonationSPP 49 2.766485 0.9016497 35844 0.10716913
## 3 ZonationZV 40 2.690867 0.9009973 21657 0.06475175
## 4 ZonationProxiDG 44 3.195526 0.9557460 51775 0.15480084
## 5 ZonationProxiDGvsSPP 54 3.549131 0.9668081 57064 0.17061430
## 6 ZonationSPP_ADMU 53 3.143760 0.9400599 30619 0.09154702
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1544491 0.06861270 70372.12
## 3 0.1006741 0.01953233 73874.25
## 4 0.2607088 0.12953301 69139.60
## 5 0.5465664 0.39626746 68933.33
## 6 0.1845294 0.10281482 70692.06
## [1] "Gossypium davidsonii"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 12 1.911161 0.8060448 118125 1.00000000
## 2 ZonationSPP 12 1.519319 0.7506243 17000 0.14391534
## 3 ZonationZV 11 1.686507 0.7931053 26470 0.22408466
## 4 ZonationProxiDG 12 2.062699 0.8539628 13483 0.11414180
## 5 ZonationProxiDGvsSPP 12 2.243877 0.8718903 8504 0.07199153
## 6 ZonationSPP_ADMU 12 1.768174 0.8004242 15308 0.12959153
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1472626 0.04715613 45878.68
## 3 0.2402001 0.11728301 43142.56
## 4 0.2185096 0.13633090 47754.42
## 5 0.2757074 0.13375313 49914.90
## 6 0.1230507 0.09758564 45802.69
## [1] "Gossypium gossypioides"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 17 1.810979 0.7667819 16653 1.0000000
## 2 ZonationSPP 14 1.630590 0.7290179 11664 0.7004143
## 3 ZonationZV 14 1.669849 0.7527787 11189 0.6718910
## 4 ZonationProxiDG 16 2.000970 0.8381286 5996 0.3600552
## 5 ZonationProxiDGvsSPP 17 2.186545 0.8618715 7471 0.4486279
## 6 ZonationSPP_ADMU 17 1.962569 0.8221942 5129 0.3079926
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.3825317 0.2812500 2064.891
## 3 0.5373821 0.6285047 2694.052
## 4 0.5507731 0.5937500 6243.583
## 5 0.8294209 0.9852941 5528.003
## 6 0.5026154 0.3072338 6066.306
## [1] "Gossypium harknesii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 8 1.2008696 0.6662204 26686 1.0000000
## 2 ZonationSPP 7 1.1828921 0.6517698 11128 0.4169977
## 3 ZonationZV 4 1.1685401 0.6768485 11624 0.4355842
## 4 ZonationProxiDG 4 0.9860941 0.5961579 3598 0.1348273
## 5 ZonationProxiDGvsSPP 8 1.6153141 0.7748724 2809 0.1052612
## 6 ZonationSPP_ADMU 8 1.2300744 0.6862326 9267 0.3472607
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.50357621 0.419117019 9682.107
## 3 0.29704419 0.179989751 8986.624
## 4 0.05202506 0.005681818 13238.403
## 5 0.62151086 0.851325758 14245.956
## 6 0.58954666 0.616462711 10488.702
## [1] "Gossypium hirsutum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 61 3.227550 0.9307643 420906 1.00000000
## 2 ZonationSPP 55 3.183042 0.9420378 49453 0.11749179
## 3 ZonationZV 51 2.767494 0.8989521 40012 0.09506161
## 4 ZonationProxiDG 52 3.462969 0.9641493 59536 0.14144726
## 5 ZonationProxiDGvsSPP 61 3.802710 0.9747267 57900 0.13756041
## 6 ZonationSPP_ADMU 60 3.181657 0.9259123 44797 0.10642994
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2751713 0.11031390 104717.04
## 3 0.2404518 0.06077914 105707.06
## 4 0.3386603 0.17127763 104165.74
## 5 0.4657398 0.32953020 104377.39
## 6 0.2151326 0.10344828 99259.31
## [1] "Gossypium thurberi"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 13 1.409299 0.7295608 118141 1.00000000
## 2 ZonationSPP 9 1.339538 0.7159201 12560 0.10631364
## 3 ZonationZV 9 1.075278 0.5305789 11322 0.09583464
## 4 ZonationProxiDG 6 1.303255 0.6845740 3042 0.02574889
## 5 ZonationProxiDGvsSPP 13 1.852870 0.7980166 4759 0.04028237
## 6 ZonationSPP_ADMU 13 1.395138 0.7353367 25653 0.21713884
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.08045636 0.04958678 55970.19
## 3 0.18876085 0.02322401 56343.29
## 4 0.09672674 0.00000000 60137.81
## 5 0.65219080 1.00000000 59586.36
## 6 0.29308793 0.17142857 50540.97
## [1] "Persea albida"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 27 2.031521 0.7989998 21096 1.0000000
## 2 ZonationSPP 26 2.016224 0.7977680 15096 0.7155859
## 3 ZonationZV 27 1.833952 0.7735263 14099 0.6683257
## 4 ZonationProxiDG 26 2.239214 0.8465747 8361 0.3963311
## 5 ZonationProxiDGvsSPP 27 2.480788 0.8912402 9175 0.4349166
## 6 ZonationSPP_ADMU 25 2.254358 0.8531253 5292 0.2508532
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.6759195 0.7147385 3538.015
## 3 0.6469096 0.7272727 3838.130
## 4 0.6498921 0.7037037 7024.993
## 5 0.8572890 1.0000000 6866.233
## 6 0.4666851 0.3307593 7778.908
## [1] "Persea americana"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 78 3.672020 0.9630866 535525 1.0000000
## 2 ZonationSPP 74 3.590925 0.9644504 96965 0.1810653
## 3 ZonationZV 71 3.518972 0.9576855 93160 0.1739601
## 4 ZonationProxiDG 73 3.968881 0.9792213 106021 0.1979758
## 5 ZonationProxiDGvsSPP 78 4.070848 0.9808247 104251 0.1946707
## 6 ZonationSPP_ADMU 77 3.578001 0.9588385 66117 0.1234620
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3128248 0.1513505 92803.99
## 3 0.3552368 0.1791425 93610.19
## 4 0.4784588 0.3140926 93300.00
## 5 0.5090175 0.3899086 92631.88
## 6 0.1891544 0.1042046 90767.36
## [1] "Persea caerulea"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 12 1.393923 0.6712677 15661 1.0000000
## 2 ZonationSPP 11 1.268939 0.6453322 10474 0.6687951
## 3 ZonationZV 12 1.411835 0.6914950 11330 0.7234532
## 4 ZonationProxiDG 11 1.616894 0.7252651 4984 0.3182428
## 5 ZonationProxiDGvsSPP 12 1.871482 0.8115177 4951 0.3161356
## 6 ZonationSPP_ADMU 11 1.520443 0.7205186 3695 0.2359364
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.5411298 0.5181003 3576.853
## 3 0.7346154 0.8509777 3457.822
## 4 0.5901941 0.5020526 6956.255
## 5 0.8114683 1.0000000 7422.265
## 6 0.3732194 0.3041667 7337.712
## [1] "Persea donnell smithii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 17 1.555843 0.7135722 19573 1.0000000
## 2 ZonationSPP 15 1.215561 0.6133786 12028 0.6145200
## 3 ZonationZV 16 1.504083 0.6898949 11467 0.5858581
## 4 ZonationProxiDG 14 1.669161 0.7469255 7122 0.3638686
## 5 ZonationProxiDGvsSPP 17 2.007639 0.8223333 6604 0.3374036
## 6 ZonationSPP_ADMU 16 1.477901 0.6739874 4129 0.2109539
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.6781369 0.9166667 4195.319
## 3 0.6486987 0.7732143 5408.784
## 4 0.5383561 0.4764716 8180.219
## 5 0.8246671 1.0000000 8119.254
## 6 0.4138170 0.2780488 8353.029
## [1] "Persea hintonii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 40 2.781610 0.9159654 107784 1.0000000
## 2 ZonationSPP 35 2.647768 0.9126671 31275 0.2901637
## 3 ZonationZV 36 2.398920 0.8870678 19727 0.1830235
## 4 ZonationProxiDG 31 2.742911 0.9251550 28671 0.2660042
## 5 ZonationProxiDGvsSPP 40 3.130853 0.9473275 30348 0.2815631
## 6 ZonationSPP_ADMU 40 2.777411 0.9154605 12520 0.1161582
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3763816 0.2951043 23753.19
## 3 0.3207556 0.1229356 26589.12
## 4 0.4170708 0.2264142 24811.60
## 5 0.6610946 0.6694918 25313.58
## 6 0.2349493 0.1067740 27883.16
## [1] "Persea liebmannii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 67 3.313460 0.9488171 194561 1.0000000
## 2 ZonationSPP 63 3.198971 0.9412424 58835 0.3023987
## 3 ZonationZV 61 3.239969 0.9464707 53696 0.2759854
## 4 ZonationProxiDG 63 3.574114 0.9668286 59996 0.3083660
## 5 ZonationProxiDGvsSPP 67 3.729445 0.9707523 57299 0.2945040
## 6 ZonationSPP_ADMU 66 3.150902 0.9246652 30891 0.1587728
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3996591 0.3958455 33428.13
## 3 0.4119329 0.2998336 34921.11
## 4 0.5330368 0.4469961 35600.77
## 5 0.6803536 0.7442424 35862.94
## 6 0.2573113 0.1373232 36188.81
## [1] "Persea longipes"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 28 2.386877 0.8771164 35231 1.0000000
## 2 ZonationSPP 25 2.196114 0.8449534 13475 0.3824757
## 3 ZonationZV 25 1.974828 0.8119032 11433 0.3245153
## 4 ZonationProxiDG 24 2.349291 0.8659661 6929 0.1966734
## 5 ZonationProxiDGvsSPP 28 2.772150 0.9269086 10744 0.3049587
## 6 ZonationSPP_ADMU 24 2.365325 0.8794771 8511 0.2415770
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.4638399 0.4285714 8299.524
## 3 0.4506665 0.4135470 8599.492
## 4 0.5109334 0.5105263 10995.848
## 5 0.7337430 0.9678676 9907.626
## 6 0.3305539 0.1507749 9967.344
## [1] "Persea pallescens"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 38 2.930099 0.9353575 38311 1.0000000
## 2 ZonationSPP 34 2.777789 0.9208327 20265 0.5289604
## 3 ZonationZV 30 2.640459 0.9068924 17776 0.4639921
## 4 ZonationProxiDG 30 2.775185 0.9223024 18227 0.4757641
## 5 ZonationProxiDGvsSPP 38 3.152129 0.9508568 16295 0.4253348
## 6 ZonationSPP_ADMU 37 2.783033 0.9116788 6648 0.1735272
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.5288863 0.5416198 5338.958
## 3 0.4885949 0.5060005 6111.110
## 4 0.4654494 0.3374294 5982.944
## 5 0.7575046 1.0000000 6570.871
## 6 0.2841084 0.1668172 8002.137
## [1] "Persea podadenia"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 24 2.475565 0.8989770 278805 1.00000000
## 2 ZonationSPP 24 2.614423 0.9116849 17071 0.06122917
## 3 ZonationZV 21 1.997844 0.8026154 23907 0.08574810
## 4 ZonationProxiDG 21 2.340774 0.8845780 17420 0.06248095
## 5 ZonationProxiDGvsSPP 24 2.831997 0.9302777 28739 0.10307921
## 6 ZonationSPP_ADMU 23 2.561838 0.9066494 24952 0.08949624
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1839584 0.07691111 84832.75
## 3 0.2131797 0.04455557 83483.01
## 4 0.1547741 0.07690391 83996.00
## 5 0.4567130 0.25080102 82005.62
## 6 0.1605592 0.10165240 81585.42
## [1] "Persea purpusii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 14 1.809947 0.7556937 24369 1.0000000
## 2 ZonationSPP 13 1.820119 0.7885455 10170 0.4173335
## 3 ZonationZV 13 1.652318 0.7374851 11497 0.4717879
## 4 ZonationProxiDG 9 1.477758 0.7339889 4816 0.1976281
## 5 ZonationProxiDGvsSPP 14 2.323842 0.8847609 6390 0.2622184
## 6 ZonationSPP_ADMU 14 1.687933 0.7087319 11447 0.4697361
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.3940318 0.3202779 7641.861
## 3 0.4065382 0.4084889 6280.218
## 4 0.2247502 0.1205193 10123.858
## 5 0.6059881 0.5168532 10149.497
## 6 0.5319144 0.4207388 6126.862
## [1] "Persea schiedeana"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 42 2.712108 0.9093644 156877 1.0000000
## 2 ZonationSPP 36 2.612615 0.9015739 37402 0.2384161
## 3 ZonationZV 35 2.516065 0.8823365 41437 0.2641369
## 4 ZonationProxiDG 36 3.003199 0.9415966 34705 0.2212243
## 5 ZonationProxiDGvsSPP 42 3.167860 0.9493668 32169 0.2050587
## 6 ZonationSPP_ADMU 40 2.724321 0.9138460 20073 0.1279537
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3432457 0.2733412 40086.48
## 3 0.4558013 0.3752278 37097.67
## 4 0.5552000 0.6057023 41562.83
## 5 0.6669372 0.8912729 41044.95
## 6 0.1965201 0.1170400 41595.50
## [1] "Persea vesticula"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 12 1.395002 0.6867649 15507 1.0000000
## 2 ZonationSPP 11 1.348000 0.6663643 12067 0.7781647
## 3 ZonationZV 11 1.404592 0.6894051 12373 0.7978977
## 4 ZonationProxiDG 10 1.618254 0.7353081 6195 0.3994970
## 5 ZonationProxiDGvsSPP 12 1.744881 0.7772759 5618 0.3622880
## 6 ZonationSPP_ADMU 12 1.572142 0.7443065 4153 0.2678145
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.6810657 0.7420519 2360.041
## 3 0.7385819 0.7902018 2365.519
## 4 0.6183623 0.6413915 6177.148
## 5 0.8122929 1.0000000 6355.560
## 6 0.5266471 0.3895017 6925.696
## [1] "Phaseolus acolius acolius"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 38 2.504516 0.8825303 290302 1.00000000
## 2 ZonationSPP 35 2.317695 0.8296423 25877 0.08913821
## 3 ZonationZV 32 2.018451 0.8088736 29217 0.10064347
## 4 ZonationProxiDG 32 2.709479 0.9233754 27323 0.09411923
## 5 ZonationProxiDGvsSPP 38 3.116360 0.9459243 33475 0.11531095
## 6 ZonationSPP_ADMU 37 2.498985 0.8783477 26198 0.09024395
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2397674 0.10024144 92203.05
## 3 0.1681227 0.04211668 91375.94
## 4 0.1758487 0.07195493 93913.99
## 5 0.5608374 0.49952765 92744.70
## 6 0.3011393 0.10939307 90508.97
## [1] "Phaseolus acolius tenuifolius"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 63 3.100174 0.9338556 919547 1.00000000
## 2 ZonationSPP 58 3.217364 0.9422056 95366 0.10370976
## 3 ZonationZV 53 3.107003 0.9386682 96691 0.10515069
## 4 ZonationProxiDG 58 3.661537 0.9717798 80927 0.08800746
## 5 ZonationProxiDGvsSPP 63 3.695559 0.9710165 91813 0.09984590
## 6 ZonationSPP_ADMU 60 3.169101 0.9370777 84822 0.09224325
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3120024 0.20036485 222888.3
## 3 0.2856545 0.06989895 224883.6
## 4 0.4103628 0.25965467 228261.9
## 5 0.5014892 0.36776918 224320.5
## 6 0.1802853 0.10376096 216147.8
## [1] "Phaseolus angustissimus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 21 1.776705 0.7483591 336963 1.00000000
## 2 ZonationSPP 13 1.850352 0.8032681 17799 0.05282182
## 3 ZonationZV 13 1.864193 0.7893131 18624 0.05527016
## 4 ZonationProxiDG 13 2.099999 0.8548130 13220 0.03923279
## 5 ZonationProxiDGvsSPP 21 2.548261 0.9073741 15598 0.04628995
## 6 ZonationSPP_ADMU 20 1.971713 0.8055251 37888 0.11243964
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.1073273 0.07569940 164405.5
## 3 0.1602608 0.01515950 165962.4
## 4 0.1378557 0.03157122 165505.0
## 5 0.5200253 0.30608886 165367.8
## 6 0.2858247 0.13145182 153274.9
## [1] "Phaseolus chiapasanus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 41 2.845998 0.9223790 80964 1.0000000
## 2 ZonationSPP 36 2.410859 0.8653860 23778 0.2936861
## 3 ZonationZV 34 2.337860 0.8586361 23247 0.2871276
## 4 ZonationProxiDG 38 3.007654 0.9371833 23715 0.2929080
## 5 ZonationProxiDGvsSPP 41 3.168191 0.9481719 27729 0.3424855
## 6 ZonationSPP_ADMU 39 2.600559 0.8912416 12165 0.1502520
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3958039 0.1856061 17596.44
## 3 0.3967151 0.1474245 17746.60
## 4 0.5367734 0.5119048 18140.79
## 5 0.7098033 0.7310559 16868.30
## 6 0.2561432 0.1545293 19008.19
## [1] "Phaseolus coccineus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 68 3.139576 0.9255544 417852 1.0000000
## 2 ZonationSPP 64 3.354340 0.9527086 93249 0.2231627
## 3 ZonationZV 60 3.316450 0.9488125 72421 0.1733173
## 4 ZonationProxiDG 61 3.642503 0.9697499 71511 0.1711395
## 5 ZonationProxiDGvsSPP 68 3.741786 0.9716398 86352 0.2066569
## 6 ZonationSPP_ADMU 66 3.325627 0.9442098 45174 0.1081100
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3746945 0.3245743 100450.8
## 3 0.3667165 0.2255192 103366.8
## 4 0.4312487 0.3309801 107257.0
## 5 0.6187359 0.5584920 103223.2
## 6 0.2367439 0.1020067 103661.6
## [1] "Phaseolus filiformis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 18 2.116032 0.8499234 207275 1.00000000
## 2 ZonationSPP 14 1.621571 0.7618803 21921 0.10575805
## 3 ZonationZV 13 2.015898 0.8510254 43484 0.20978893
## 4 ZonationProxiDG 15 2.313701 0.8915798 19899 0.09600289
## 5 ZonationProxiDGvsSPP 18 2.509307 0.9081812 15929 0.07684960
## 6 ZonationSPP_ADMU 18 1.956183 0.8212657 19326 0.09323845
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1222058 0.05354508 71802.99
## 3 0.2881135 0.12582182 67701.40
## 4 0.2525269 0.07971501 74822.78
## 5 0.4179737 0.20152665 76199.07
## 6 0.2051027 0.10143623 72515.48
## [1] "Phaseolus glabellus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 17 1.759909 0.7869111 26548 1.0000000
## 2 ZonationSPP 16 1.709514 0.7737983 14277 0.5377806
## 3 ZonationZV 15 1.771776 0.8184335 11860 0.4467380
## 4 ZonationProxiDG 14 1.800013 0.8101427 8414 0.3169354
## 5 ZonationProxiDGvsSPP 17 2.025669 0.8458610 8418 0.3170860
## 6 ZonationSPP_ADMU 17 1.624343 0.7354095 7138 0.2688715
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.4871273 0.5745646 6018.394
## 3 0.4250303 0.2830189 8208.088
## 4 0.4138722 0.2924528 9507.042
## 5 0.7738912 0.9836066 9342.883
## 6 0.3821150 0.3584906 8768.306
## [1] "Phaseolus jaliscanus"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 26 2.298852 0.8619277 30800 1.0000000
## 2 ZonationSPP 26 1.833987 0.7777301 15099 0.4902273
## 3 ZonationZV 17 1.680363 0.7264425 11789 0.3827597
## 4 ZonationProxiDG 22 2.024445 0.8324530 10044 0.3261039
## 5 ZonationProxiDGvsSPP 26 2.620878 0.9031945 11956 0.3881818
## 6 ZonationSPP_ADMU 25 2.415415 0.8863342 4713 0.1530195
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.4208780 0.3261878 5241.964
## 3 0.2934353 0.1171076 6691.196
## 4 0.3614161 0.1294576 8014.758
## 5 0.7609227 0.9530281 7986.061
## 6 0.3002099 0.1553524 9939.732
## [1] "Phaseolus leptostachyus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 68 3.288266 0.9457308 422741 1.0000000
## 2 ZonationSPP 59 3.116966 0.9347849 82339 0.1947741
## 3 ZonationZV 60 3.131688 0.9376438 68157 0.1612264
## 4 ZonationProxiDG 62 3.577427 0.9687272 65181 0.1541866
## 5 ZonationProxiDGvsSPP 68 3.668655 0.9712176 81999 0.1939698
## 6 ZonationSPP_ADMU 64 3.300401 0.9487118 47623 0.1126529
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2716081 0.1761474 81229.32
## 3 0.3604641 0.1960980 85202.77
## 4 0.4276655 0.3025478 90648.00
## 5 0.5928080 0.4897269 87406.05
## 6 0.2307082 0.1201831 88543.08
## [1] "Phaseolus lunatus silvester"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 60 3.364456 0.9460388 571562 1.00000000
## 2 ZonationSPP 55 3.206935 0.9448856 49512 0.08662577
## 3 ZonationZV 52 2.927197 0.9153218 41995 0.07347409
## 4 ZonationProxiDG 54 3.630319 0.9713810 81195 0.14205808
## 5 ZonationProxiDGvsSPP 60 3.795330 0.9748544 73395 0.12841127
## 6 ZonationSPP_ADMU 59 3.249569 0.9353393 50864 0.08899122
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.1758699 0.07650816 126145.8
## 3 0.1519057 0.04157664 127824.1
## 4 0.2817797 0.16567696 124211.9
## 5 0.4493052 0.24819630 124392.6
## 6 0.1382835 0.09733729 120244.8
## [1] "Phaseolus maculatus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 39 2.278098 0.8483775 328478 1.00000000
## 2 ZonationSPP 38 2.667261 0.9066362 27683 0.08427657
## 3 ZonationZV 34 2.526546 0.8941600 18393 0.05599462
## 4 ZonationProxiDG 31 2.880978 0.9292471 22643 0.06893308
## 5 ZonationProxiDGvsSPP 39 3.129158 0.9438776 30293 0.09222231
## 6 ZonationSPP_ADMU 38 2.401405 0.8652408 22581 0.06874433
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2888752 0.18852459 121337.4
## 3 0.2829775 0.06274078 123629.7
## 4 0.3670021 0.12371134 124439.6
## 5 0.6096250 0.80620155 121645.8
## 6 0.1836967 0.11348315 120091.7
## [1] "Phaseolus micranthus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 56 3.236555 0.9484990 261071 1.00000000
## 2 ZonationSPP 52 3.073594 0.9358325 42816 0.16400136
## 3 ZonationZV 48 2.904704 0.9218166 29180 0.11177036
## 4 ZonationProxiDG 52 3.286293 0.9573170 52049 0.19936722
## 5 ZonationProxiDGvsSPP 56 3.544901 0.9649520 56506 0.21643921
## 6 ZonationSPP_ADMU 54 3.280026 0.9487408 20975 0.08034213
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3178692 0.13654184 52061.65
## 3 0.3281058 0.08307490 55577.04
## 4 0.4159294 0.28832889 51401.21
## 5 0.5665732 0.45230971 50120.05
## 6 0.1448117 0.09755353 54717.57
## [1] "Phaseolus microcarpus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 53 3.051042 0.9244969 254960 1.0000000
## 2 ZonationSPP 43 2.432531 0.8362278 40087 0.1572286
## 3 ZonationZV 41 2.404619 0.8478811 30087 0.1180067
## 4 ZonationProxiDG 41 3.179373 0.9513203 43285 0.1697717
## 5 ZonationProxiDGvsSPP 53 3.496387 0.9644654 45930 0.1801459
## 6 ZonationSPP_ADMU 51 3.003395 0.9228005 28154 0.1104252
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2030644 0.08231459 56798.62
## 3 0.1897646 0.03811463 60959.85
## 4 0.2752974 0.12302620 64208.57
## 5 0.5605554 0.44091456 63544.42
## 6 0.2191653 0.10300012 62528.17
## [1] "Phaseolus parvifolius"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 53 2.864278 0.9196176 321070 1.00000000
## 2 ZonationSPP 45 2.722042 0.9038950 46305 0.14422089
## 3 ZonationZV 37 2.580939 0.8943947 31152 0.09702557
## 4 ZonationProxiDG 44 3.093649 0.9447151 31714 0.09877597
## 5 ZonationProxiDGvsSPP 53 3.404103 0.9592985 43022 0.13399570
## 6 ZonationSPP_ADMU 52 2.934039 0.9289258 30710 0.09564892
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2322728 0.08548387 81004.81
## 3 0.2059477 0.03995596 84070.96
## 4 0.3517474 0.11527631 86422.63
## 5 0.5822447 0.52618243 84596.07
## 6 0.2185122 0.11739865 83195.61
## [1] "Phaseolus parvulus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 20 1.874584 0.8061556 140336 1.0000000
## 2 ZonationSPP 18 2.101350 0.8539649 17657 0.1258195
## 3 ZonationZV 17 1.841442 0.7830820 17220 0.1227055
## 4 ZonationProxiDG 12 2.110119 0.8675042 16211 0.1155156
## 5 ZonationProxiDGvsSPP 20 2.417943 0.8903362 15532 0.1106772
## 6 ZonationSPP_ADMU 18 1.839390 0.7855472 16056 0.1144111
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3279739 0.17231339 56390.74
## 3 0.2404290 0.10790531 57734.95
## 4 0.1742918 0.03509056 58051.28
## 5 0.6275244 0.81915485 57972.82
## 6 0.2080100 0.11401021 55412.53
## [1] "Phaseolus pauciflorus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 49 2.773784 0.9027117 271206 1.00000000
## 2 ZonationSPP 43 2.838398 0.9242177 57832 0.21324012
## 3 ZonationZV 37 2.794101 0.9205913 45759 0.16872414
## 4 ZonationProxiDG 42 3.050716 0.9454678 39403 0.14528808
## 5 ZonationProxiDGvsSPP 49 3.297902 0.9556419 48654 0.17939869
## 6 ZonationSPP_ADMU 47 2.763666 0.9005823 26248 0.09678252
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3084045 0.1829971 73941.83
## 3 0.2505699 0.1134865 76231.96
## 4 0.3568639 0.1570252 79924.74
## 5 0.6272152 0.6125385 76842.85
## 6 0.2474452 0.1003697 76456.62
## [1] "Phaseolus pedicellatus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 48 2.870531 0.9161951 140776 1.0000000
## 2 ZonationSPP 47 2.877661 0.9293951 49824 0.3539240
## 3 ZonationZV 42 2.772953 0.9115372 35779 0.2541555
## 4 ZonationProxiDG 41 3.066173 0.9446892 36493 0.2592274
## 5 ZonationProxiDGvsSPP 48 3.277753 0.9541629 40761 0.2895451
## 6 ZonationSPP_ADMU 47 2.859592 0.9147799 20671 0.1468361
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4860969 0.4156309 31244.27
## 3 0.4043898 0.2506706 33434.78
## 4 0.4225414 0.2984936 35436.29
## 5 0.7116698 0.8993500 33596.89
## 6 0.3393299 0.1795135 36117.94
## [1] "Phaseolus perplexus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 50 2.963228 0.9335657 161839 1.0000000
## 2 ZonationSPP 44 2.680825 0.9103554 41217 0.2546790
## 3 ZonationZV 38 2.620763 0.8985378 32575 0.2012803
## 4 ZonationProxiDG 41 3.054744 0.9448610 36933 0.2282083
## 5 ZonationProxiDGvsSPP 50 3.306005 0.9570227 44723 0.2763425
## 6 ZonationSPP_ADMU 46 2.958569 0.9359578 16565 0.1023548
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2868533 0.12909725 33436.85
## 3 0.2729307 0.07919339 35378.96
## 4 0.4199680 0.29340272 35978.86
## 5 0.7065483 0.98892551 34103.46
## 6 0.1943431 0.10241556 37661.86
## [1] "Phaseolus pluriflorus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 33 2.379244 0.8689970 95598 1.0000000
## 2 ZonationSPP 32 2.387649 0.8774678 32243 0.3372769
## 3 ZonationZV 31 2.284425 0.8635007 26845 0.2808113
## 4 ZonationProxiDG 30 2.509554 0.9013375 21170 0.2214481
## 5 ZonationProxiDGvsSPP 33 2.866780 0.9283414 23209 0.2427770
## 6 ZonationSPP_ADMU 32 2.554369 0.8931463 11097 0.1160798
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4779008 0.4654378 26715.46
## 3 0.4405415 0.4389648 27820.19
## 4 0.4996062 0.4220183 30708.03
## 5 0.7113933 0.9523810 29814.23
## 6 0.3092258 0.1594951 31074.55
## [1] "Phaseolus ritensis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 32 2.208926 0.8520678 291872 1.00000000
## 2 ZonationSPP 27 2.465163 0.8960273 28950 0.09918731
## 3 ZonationZV 26 2.304332 0.8601967 22609 0.07746204
## 4 ZonationProxiDG 25 2.547995 0.9139962 25391 0.08699361
## 5 ZonationProxiDGvsSPP 32 2.802691 0.9240510 25941 0.08887800
## 6 ZonationSPP_ADMU 32 2.157000 0.8457424 31365 0.10746149
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3345869 0.15232628 104100.3
## 3 0.3222070 0.05722554 107844.0
## 4 0.3243292 0.10759858 107241.5
## 5 0.5972302 0.74429634 106625.5
## 6 0.2995956 0.11020507 100873.2
## [1] "Phaseolus scabrellus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 30 2.344051 0.8731084 273446 1.00000000
## 2 ZonationSPP 28 2.572922 0.9034587 28066 0.10263818
## 3 ZonationZV 26 2.338689 0.8620962 24275 0.08877438
## 4 ZonationProxiDG 25 2.457378 0.9032285 18466 0.06753070
## 5 ZonationProxiDGvsSPP 30 2.909706 0.9363376 26724 0.09773045
## 6 ZonationSPP_ADMU 29 2.328426 0.8699108 34897 0.12761935
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2492034 0.14929005 89948.53
## 3 0.2728436 0.11324587 92194.63
## 4 0.2470946 0.04960097 93475.66
## 5 0.5289830 0.37184812 91707.34
## 6 0.2547865 0.11953835 86327.91
## [1] "Phaseolus vulgarisl"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 60 3.187809 0.9377518 308454 1.0000000
## 2 ZonationSPP 57 2.960281 0.9235900 72097 0.2337366
## 3 ZonationZV 54 2.942904 0.9197487 55786 0.1808568
## 4 ZonationProxiDG 54 3.503633 0.9657916 59853 0.1940419
## 5 ZonationProxiDGvsSPP 60 3.597711 0.9682026 68462 0.2219521
## 6 ZonationSPP_ADMU 59 3.271591 0.9449536 34237 0.1109955
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3000394 0.1967160 59912.56
## 3 0.3282925 0.2034021 64512.73
## 4 0.4449208 0.3168237 69260.02
## 5 0.5907936 0.4669158 67587.63
## 6 0.2481259 0.1197534 69065.72
## [1] "Physalis acolia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 55 3.149567 0.9403533 498689 1.00000000
## 2 ZonationSPP 44 2.937138 0.9300688 42581 0.08538588
## 3 ZonationZV 43 2.337853 0.8734226 56591 0.11347954
## 4 ZonationProxiDG 46 3.202364 0.9535261 47166 0.09457999
## 5 ZonationProxiDGvsSPP 55 3.595390 0.9653275 42222 0.08466599
## 6 ZonationSPP_ADMU 54 3.086033 0.9404052 54892 0.11007261
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.1122045 0.04182820 113802.6
## 3 0.1246503 0.01272488 108741.3
## 4 0.1924334 0.07424498 114029.8
## 5 0.4257760 0.19671803 115235.3
## 6 0.1471238 0.10000000 109450.0
## [1] "Physalis angulata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 91 3.609054 0.9573431 1435760 1.00000000
## 2 ZonationSPP 85 3.643900 0.9604847 130119 0.09062726
## 3 ZonationZV 82 3.538147 0.9585071 138200 0.09625564
## 4 ZonationProxiDG 87 4.146595 0.9826222 121943 0.08493272
## 5 ZonationProxiDGvsSPP 91 4.181166 0.9822139 134884 0.09394606
## 6 ZonationSPP_ADMU 90 3.660166 0.9613558 132086 0.09199727
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2458078 0.12816901 281863.9
## 3 0.2837860 0.09956377 283630.2
## 4 0.3512931 0.18231973 286462.2
## 5 0.4029350 0.23431225 283017.1
## 6 0.1611642 0.09871960 271658.1
## [1] "Physalis angustiphysa"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 61 3.112287 0.9240403 471541 1.00000000
## 2 ZonationSPP 56 3.068952 0.9284587 80788 0.17132763
## 3 ZonationZV 55 3.047376 0.9316752 62811 0.13320369
## 4 ZonationProxiDG 58 3.631047 0.9694528 61849 0.13116357
## 5 ZonationProxiDGvsSPP 61 3.767379 0.9719420 71390 0.15139723
## 6 ZonationSPP_ADMU 59 3.170673 0.9324400 43203 0.09162088
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3086278 0.19591837 115094.7
## 3 0.3284411 0.15423586 119728.2
## 4 0.4066645 0.24132786 124137.8
## 5 0.5144529 0.41698565 121034.1
## 6 0.1474633 0.09993998 119228.3
## [1] "Physalis campechiana"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 56 2.825743 0.8983111 313724 1.0000000
## 2 ZonationSPP 46 2.938368 0.9291232 40880 0.1303056
## 3 ZonationZV 44 2.563110 0.8682952 31728 0.1011335
## 4 ZonationProxiDG 49 3.161926 0.9466703 34030 0.1084711
## 5 ZonationProxiDGvsSPP 56 3.644714 0.9687294 40096 0.1278066
## 6 ZonationSPP_ADMU 53 2.885720 0.9020500 38955 0.1241697
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2182798 0.13853610 94286.74
## 3 0.2046075 0.03795277 95230.90
## 4 0.2649607 0.08692842 94536.74
## 5 0.5995160 0.62355773 94967.73
## 6 0.1938101 0.12773705 88453.35
## [1] "Physalis caudella"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 43 2.523459 0.8742634 462877 1.00000000
## 2 ZonationSPP 37 3.010031 0.9387827 64317 0.13895052
## 3 ZonationZV 35 2.926109 0.9292766 50624 0.10936815
## 4 ZonationProxiDG 34 3.037553 0.9462800 41223 0.08905822
## 5 ZonationProxiDGvsSPP 43 3.259973 0.9519742 49841 0.10767655
## 6 ZonationSPP_ADMU 42 2.588600 0.8762432 54142 0.11696844
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3586554 0.2857143 153301.7
## 3 0.2930661 0.1293266 156810.1
## 4 0.3234735 0.1375395 158497.2
## 5 0.5493293 0.4458537 156378.2
## 6 0.2760846 0.1117293 145499.1
## [1] "Physalis chenopodifolia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 61 2.894704 0.9056719 431526 1.00000000
## 2 ZonationSPP 57 3.101712 0.9368389 72405 0.16778827
## 3 ZonationZV 56 3.105282 0.9364834 59098 0.13695119
## 4 ZonationProxiDG 54 3.509640 0.9650164 56938 0.13194570
## 5 ZonationProxiDGvsSPP 61 3.648427 0.9687086 65975 0.15288766
## 6 ZonationSPP_ADMU 59 2.992292 0.9233160 40131 0.09299787
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3109141 0.20731471 120721.4
## 3 0.3557561 0.19874406 122665.2
## 4 0.4235109 0.25586002 127367.6
## 5 0.5911322 0.53132657 124112.4
## 6 0.2191101 0.09979663 122616.5
## [1] "Physalis cinerascens"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 81 3.241897 0.9397098 982969 1.00000000
## 2 ZonationSPP 73 3.535576 0.9618018 124378 0.12653298
## 3 ZonationZV 73 3.415803 0.9553610 104745 0.10655982
## 4 ZonationProxiDG 79 3.853463 0.9764001 93566 0.09518713
## 5 ZonationProxiDGvsSPP 81 3.977244 0.9780546 106507 0.10835235
## 6 ZonationSPP_ADMU 79 3.310914 0.9412474 113946 0.11592024
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3578366 0.2694724 227552.8
## 3 0.3720339 0.2369043 228980.7
## 4 0.4248263 0.2721670 232759.8
## 5 0.5372281 0.4666667 229543.0
## 6 0.2502511 0.1112298 214160.6
## [1] "Physalis cordata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 87 3.575064 0.9549512 618351 1.0000000
## 2 ZonationSPP 81 3.520668 0.9548150 97234 0.1572473
## 3 ZonationZV 76 3.374968 0.9471349 78309 0.1266417
## 4 ZonationProxiDG 78 3.899211 0.9771025 100012 0.1617399
## 5 ZonationProxiDGvsSPP 87 4.092291 0.9807471 103897 0.1680227
## 6 ZonationSPP_ADMU 86 3.590529 0.9546509 67281 0.1088071
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3092030 0.1428571 118434.1
## 3 0.2910056 0.1091039 121610.9
## 4 0.3896471 0.2174235 121280.8
## 5 0.5336011 0.4242132 121449.8
## 6 0.1836771 0.1026362 117141.7
## [1] "Physalis coztomatl"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 70 3.314806 0.9425700 444311 1.0000000
## 2 ZonationSPP 62 3.401140 0.9534049 99022 0.2228664
## 3 ZonationZV 60 3.277987 0.9443959 69446 0.1563004
## 4 ZonationProxiDG 66 3.750684 0.9740622 87371 0.1966438
## 5 ZonationProxiDGvsSPP 70 3.840109 0.9751548 95652 0.2152816
## 6 ZonationSPP_ADMU 66 3.487796 0.9585745 47856 0.1077083
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3101966 0.1999187 91567.34
## 3 0.3066409 0.1294708 95698.19
## 4 0.4548486 0.3180279 98372.36
## 5 0.5843437 0.5039176 95327.65
## 6 0.1801521 0.1007693 97255.66
## [1] "Physalis crassifolia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 33 2.605799 0.9122347 392425 1.00000000
## 2 ZonationSPP 23 2.410087 0.8898625 40998 0.10447347
## 3 ZonationZV 24 2.230397 0.8762501 45365 0.11560171
## 4 ZonationProxiDG 24 2.697037 0.9257684 28788 0.07335924
## 5 ZonationProxiDGvsSPP 33 2.957146 0.9389825 22731 0.05792444
## 6 ZonationSPP_ADMU 33 2.660539 0.9198228 46959 0.11966363
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.09674387 0.04458599 105702.7
## 3 0.18794386 0.01600000 103898.4
## 4 0.19824765 0.06674672 109226.1
## 5 0.49231384 0.21269350 111385.9
## 6 0.25773265 0.13503759 104058.6
## [1] "Physalis glutinosa"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 36 2.232854 0.8505127 154005 1.00000000
## 2 ZonationSPP 31 2.498501 0.8935543 20666 0.13419045
## 3 ZonationZV 29 2.443889 0.8858776 13143 0.08534139
## 4 ZonationProxiDG 25 2.580391 0.9036094 12736 0.08269861
## 5 ZonationProxiDGvsSPP 36 2.917804 0.9340739 21458 0.13933314
## 6 ZonationSPP_ADMU 35 2.402754 0.8810814 18707 0.12147008
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3463026 0.15399379 54401.11
## 3 0.3277152 0.07896891 56286.58
## 4 0.3686594 0.11935192 57604.10
## 5 0.7016511 1.00000000 54850.26
## 6 0.3295132 0.20227273 54223.62
## [1] "Physalis gracilis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 80 3.527979 0.9607753 454107 1.0000000
## 2 ZonationSPP 74 3.387909 0.9564053 82449 0.1815629
## 3 ZonationZV 71 3.282695 0.9473749 83212 0.1832432
## 4 ZonationProxiDG 71 3.751521 0.9732456 79297 0.1746218
## 5 ZonationProxiDGvsSPP 80 3.943481 0.9770394 83190 0.1831947
## 6 ZonationSPP_ADMU 79 3.453860 0.9551284 60623 0.1334994
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2709995 0.1573648 78252.00
## 3 0.3193009 0.1674883 77689.44
## 4 0.4494251 0.3098523 80881.77
## 5 0.5794467 0.4957633 79530.87
## 6 0.1821823 0.1041591 78393.71
## [1] "Physalis hederifolia"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 80 3.420422 0.9508040 1689392 1.00000000
## 2 ZonationSPP 74 3.606575 0.9637009 146082 0.08647016
## 3 ZonationZV 71 3.524797 0.9597032 138525 0.08199696
## 4 ZonationProxiDG 76 4.062794 0.9815243 130260 0.07710466
## 5 ZonationProxiDGvsSPP 80 4.066982 0.9804547 155926 0.09229711
## 6 ZonationSPP_ADMU 78 3.432572 0.9509284 165019 0.09767952
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2380009 0.08743709 358851.2
## 3 0.2766639 0.11953757 361109.1
## 4 0.3871421 0.20037733 363871.6
## 5 0.4379687 0.31108710 357903.2
## 6 0.1441003 0.10003147 338412.2
## [1] "Physalis heterophylla"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 17 1.826565 0.8054704 88371 1.00000000
## 2 ZonationSPP 15 2.014873 0.8409752 13712 0.15516402
## 3 ZonationZV 15 1.785321 0.7548024 14063 0.15913592
## 4 ZonationProxiDG 13 2.053232 0.8589583 12306 0.13925383
## 5 ZonationProxiDGvsSPP 17 2.329611 0.8880345 8466 0.09580066
## 6 ZonationSPP_ADMU 17 1.669866 0.7409450 14918 0.16881104
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3005462 0.20674468 35082.33
## 3 0.3259638 0.23529412 35434.83
## 4 0.3065900 0.09370117 35788.54
## 5 0.5806407 0.75517891 36823.04
## 6 0.3733100 0.24959872 32973.63
## [1] "Physalis ignota"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 10 1.203360 0.6068403 341 1.0000000
## 2 ZonationSPP 10 1.203360 0.6068403 341 1.0000000
## 3 ZonationZV 8 1.121294 0.5818540 309 0.9061584
## 4 ZonationProxiDG 10 1.188717 0.6011344 338 0.9912023
## 5 ZonationProxiDGvsSPP 10 1.206900 0.6086616 339 0.9941349
## 6 ZonationSPP_ADMU 10 1.203360 0.6068403 341 1.0000000
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000000
## 2 1.0000000 1.0000000 0.000000
## 3 0.7151735 0.8964859 16.970563
## 4 0.9800000 1.0000000 2.236068
## 5 0.9989305 1.0000000 2.000000
## 6 1.0000000 1.0000000 0.000000
## [1] "Physalis ixocarpa"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 43 2.842277 0.9259157 122497 1.0000000
## 2 ZonationSPP 39 2.645907 0.9050735 28601 0.2334833
## 3 ZonationZV 37 2.685304 0.9036650 29480 0.2406590
## 4 ZonationProxiDG 38 2.802823 0.9248131 20017 0.1634081
## 5 ZonationProxiDGvsSPP 43 3.231307 0.9528872 23086 0.1884618
## 6 ZonationSPP_ADMU 39 2.608392 0.8946176 27784 0.2268137
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4215381 0.2500000 27631.30
## 3 0.4629824 0.3075765 27244.74
## 4 0.5028069 0.4238683 30368.53
## 5 0.6511034 0.8851413 29711.84
## 6 0.3316950 0.1428571 26788.78
## [1] "Physalis lagascae"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 83 3.505410 0.9521138 1148441 1.00000000
## 2 ZonationSPP 76 3.543584 0.9579253 134256 0.11690283
## 3 ZonationZV 77 3.530246 0.9588895 108899 0.09482333
## 4 ZonationProxiDG 80 4.038593 0.9805639 118108 0.10284203
## 5 ZonationProxiDGvsSPP 83 4.056725 0.9799021 138617 0.12070015
## 6 ZonationSPP_ADMU 80 3.501698 0.9542191 116462 0.10140878
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2648141 0.1241808 234114.2
## 3 0.3054723 0.1200105 239345.5
## 4 0.3781904 0.1983936 241162.4
## 5 0.4502310 0.3231549 236506.2
## 6 0.1573705 0.1000170 227420.2
## [1] "Physalis leptophylla"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 62 3.153738 0.9386132 435784 1.00000000
## 2 ZonationSPP 54 2.741713 0.8873756 50234 0.11527270
## 3 ZonationZV 53 2.745877 0.9011439 43088 0.09887467
## 4 ZonationProxiDG 51 3.312810 0.9592421 55379 0.12707901
## 5 ZonationProxiDGvsSPP 62 3.656752 0.9698055 64248 0.14743084
## 6 ZonationSPP_ADMU 61 3.202461 0.9414342 38217 0.08769712
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1719556 0.07887413 95748.34
## 3 0.1808001 0.03870866 98932.65
## 4 0.2332292 0.08608698 100287.36
## 5 0.5657820 0.52243257 99504.39
## 6 0.2258160 0.10315482 99064.27
## [1] "Physalis melanocystis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 63 3.478986 0.9615332 337169 1.0000000
## 2 ZonationSPP 58 3.154309 0.9389948 51999 0.1542224
## 3 ZonationZV 55 2.990934 0.9349644 47209 0.1400158
## 4 ZonationProxiDG 54 3.526030 0.9669428 53727 0.1593474
## 5 ZonationProxiDGvsSPP 63 3.780971 0.9736092 54120 0.1605130
## 6 ZonationSPP_ADMU 62 3.313657 0.9437572 48690 0.1444083
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2715027 0.1597152 56928.61
## 3 0.2526017 0.1017294 58402.05
## 4 0.3278260 0.1960746 59648.59
## 5 0.5085264 0.3490655 58840.99
## 6 0.2375710 0.1250000 56457.34
## [1] "Physalis minuta"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 42 3.122271 0.9431651 145721 1.00000000
## 2 ZonationSPP 35 2.658053 0.8960053 16107 0.11053314
## 3 ZonationZV 31 2.368161 0.8537371 7141 0.04900460
## 4 ZonationProxiDG 31 2.767593 0.9227767 24103 0.16540512
## 5 ZonationProxiDGvsSPP 42 3.436018 0.9630755 28030 0.19235388
## 6 ZonationSPP_ADMU 41 2.937762 0.9109982 13963 0.09582009
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1911845 0.078213389 31827.08
## 3 0.1081783 0.005701335 33852.18
## 4 0.2341784 0.075188308 31156.27
## 5 0.5163112 0.371472160 30299.58
## 6 0.2239075 0.114945660 31072.43
## [1] "Physalis nicandroides"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 76 3.473756 0.9515301 595992 1.0000000
## 2 ZonationSPP 67 3.282820 0.9401362 94583 0.1586984
## 3 ZonationZV 62 3.288143 0.9441655 75866 0.1272937
## 4 ZonationProxiDG 69 3.813400 0.9751171 82944 0.1391697
## 5 ZonationProxiDGvsSPP 76 3.903655 0.9766830 101426 0.1701801
## 6 ZonationSPP_ADMU 76 3.487838 0.9544501 62917 0.1055669
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2802582 0.1261734 113703.5
## 3 0.2905193 0.1104372 118187.3
## 4 0.3729131 0.2432566 123262.4
## 5 0.5193772 0.4118858 118711.6
## 6 0.2119012 0.1049150 118824.2
## [1] "Physalis orizabae"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 78 3.141041 0.9262123 398763 1.0000000
## 2 ZonationSPP 69 3.252985 0.9412005 82857 0.2077851
## 3 ZonationZV 67 3.243917 0.9409341 63602 0.1594982
## 4 ZonationProxiDG 72 3.696863 0.9702428 65200 0.1635056
## 5 ZonationProxiDGvsSPP 78 3.835896 0.9729656 75904 0.1903487
## 6 ZonationSPP_ADMU 77 3.238072 0.9375666 48717 0.1221703
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3363426 0.2767685 93517.88
## 3 0.3740646 0.2001077 97200.63
## 4 0.4567494 0.3254410 101446.53
## 5 0.6289375 0.6213670 98799.43
## 6 0.2338747 0.1214842 97122.97
## [1] "Physalis patula"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 82 3.465712 0.9482313 1397995 1.00000000
## 2 ZonationSPP 77 3.657302 0.9637779 153875 0.11006835
## 3 ZonationZV 75 3.631952 0.9623461 121163 0.08666912
## 4 ZonationProxiDG 77 4.140520 0.9830229 145994 0.10443099
## 5 ZonationProxiDGvsSPP 82 4.129721 0.9816388 159283 0.11393675
## 6 ZonationSPP_ADMU 80 3.525150 0.9549836 143578 0.10270280
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2589834 0.1452652 301515.2
## 3 0.2994149 0.1499598 305473.0
## 4 0.4058605 0.2587965 307307.9
## 5 0.4180481 0.2794852 302558.0
## 6 0.1309470 0.1000381 289360.0
## [1] "Physalis philadelphica"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 97 3.727412 0.9611199 904023 1.00000000
## 2 ZonationSPP 86 3.701432 0.9629227 142325 0.15743515
## 3 ZonationZV 88 3.743617 0.9657670 114396 0.12654103
## 4 ZonationProxiDG 92 4.187257 0.9835194 136718 0.15123288
## 5 ZonationProxiDGvsSPP 97 4.215717 0.9828007 144711 0.16007447
## 6 ZonationSPP_ADMU 93 3.757288 0.9639998 88887 0.09832383
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2848685 0.14935407 159506.6
## 3 0.3536596 0.17176378 164601.1
## 4 0.4537558 0.31382979 167878.1
## 5 0.4902015 0.35416297 163581.1
## 6 0.1494158 0.09904578 162652.1
## [1] "Physalis pruinosa"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 86 3.656444 0.9595051 1352156 1.00000000
## 2 ZonationSPP 80 3.639146 0.9616306 133189 0.09850121
## 3 ZonationZV 81 3.579866 0.9611077 119307 0.08823464
## 4 ZonationProxiDG 83 4.134369 0.9824945 134396 0.09939386
## 5 ZonationProxiDGvsSPP 86 4.181455 0.9828699 150565 0.11135180
## 6 ZonationSPP_ADMU 84 3.721651 0.9652966 126655 0.09366893
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2392128 0.1290502 258642.7
## 3 0.2994042 0.1344599 262159.2
## 4 0.3840239 0.2082586 261796.1
## 5 0.3903968 0.2559880 258505.0
## 6 0.1168084 0.1000698 249257.7
## [1] "Physalis pubescens"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 101 3.844578 0.9665952 1785127 1.0000000
## 2 ZonationSPP 99 3.983293 0.9750127 198989 0.1114705
## 3 ZonationZV 97 3.845949 0.9716374 195992 0.1097916
## 4 ZonationProxiDG 100 4.392795 0.9868339 185725 0.1040402
## 5 ZonationProxiDGvsSPP 101 4.391633 0.9862956 202808 0.1136098
## 6 ZonationSPP_ADMU 100 3.899952 0.9698182 184440 0.1033204
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2821266 0.1540188 308124.3
## 3 0.3276559 0.1536418 310982.0
## 4 0.4233970 0.2266546 313932.4
## 5 0.3969955 0.2672446 309234.2
## 6 0.1307179 0.1002571 295396.8
## [1] "Physalis solanaceus"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 78 3.048659 0.9315443 832109 1.00000000
## 2 ZonationSPP 71 3.328936 0.9488220 95717 0.11502940
## 3 ZonationZV 68 3.304642 0.9470454 80940 0.09727091
## 4 ZonationProxiDG 69 3.698901 0.9699231 53559 0.06436537
## 5 ZonationProxiDGvsSPP 78 3.830518 0.9716194 84297 0.10130524
## 6 ZonationSPP_ADMU 76 3.096109 0.9301322 108008 0.12980030
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3158810 0.1923185 202544.9
## 3 0.3385538 0.1735232 204715.2
## 4 0.3326111 0.1510023 211583.3
## 5 0.5735820 0.6200335 205880.7
## 6 0.2591929 0.1372639 191545.0
## [1] "Physalis sordida"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 67 3.098466 0.9297354 660887 1.00000000
## 2 ZonationSPP 58 3.152893 0.9370544 91535 0.13850325
## 3 ZonationZV 60 3.014733 0.9292236 71348 0.10795794
## 4 ZonationProxiDG 60 3.564010 0.9677475 64768 0.09800163
## 5 ZonationProxiDGvsSPP 67 3.791190 0.9724704 79116 0.11971184
## 6 ZonationSPP_ADMU 65 3.016424 0.9230391 81122 0.12274716
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2599845 0.1406083 160889.5
## 3 0.2700365 0.1271233 162466.8
## 4 0.3609121 0.2000000 167868.8
## 5 0.5196274 0.4401244 165255.4
## 6 0.1919522 0.1001590 153960.6
## [1] "Physalis sulphurea"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 54 2.790351 0.9080823 238323 1.0000000
## 2 ZonationSPP 46 2.586994 0.8844709 44712 0.1876109
## 3 ZonationZV 41 2.500312 0.8778023 34841 0.1461924
## 4 ZonationProxiDG 46 3.101013 0.9442791 28461 0.1194220
## 5 ZonationProxiDGvsSPP 54 3.381135 0.9576629 38782 0.1627287
## 6 ZonationSPP_ADMU 53 2.761987 0.9096028 26795 0.1124314
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2824962 0.13083495 59768.18
## 3 0.2695419 0.06768965 62521.44
## 4 0.3412237 0.15701243 68253.42
## 5 0.6187359 0.68844365 65979.32
## 6 0.2597191 0.11008478 64958.07
## [1] "Physalis virginiana"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 73 2.894052 0.9136809 942152 1.00000000
## 2 ZonationSPP 64 3.275640 0.9501840 102044 0.10830949
## 3 ZonationZV 67 3.321610 0.9505364 90120 0.09565336
## 4 ZonationProxiDG 69 3.647078 0.9700821 72545 0.07699925
## 5 ZonationProxiDGvsSPP 73 3.759164 0.9704459 89561 0.09506003
## 6 ZonationSPP_ADMU 71 2.936189 0.9176298 98921 0.10499474
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3338733 0.2547033 265281.9
## 3 0.3849961 0.2248354 266926.8
## 4 0.3988375 0.2395919 269317.3
## 5 0.5724531 0.5454545 264801.5
## 6 0.2237510 0.1124065 250379.2
## [1] "Physalis volubilis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 55 2.970157 0.9267991 167596 1.0000000
## 2 ZonationSPP 52 2.751888 0.9107442 51407 0.3067317
## 3 ZonationZV 47 2.621507 0.8997765 34808 0.2076899
## 4 ZonationProxiDG 52 3.107311 0.9433411 34177 0.2039249
## 5 ZonationProxiDGvsSPP 55 3.406276 0.9581062 41518 0.2477267
## 6 ZonationSPP_ADMU 52 2.937955 0.9228137 21576 0.1287382
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4009679 0.2873887 32618.34
## 3 0.3175100 0.1104518 37790.71
## 4 0.4488184 0.3169014 40564.68
## 5 0.6747052 0.7804428 38802.46
## 6 0.2421900 0.1274434 39527.64
## [1] "Physalis waterfallii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 47 2.807716 0.9184674 133024 1.0000000
## 2 ZonationSPP 45 2.760311 0.9190042 39878 0.2997805
## 3 ZonationZV 41 2.646822 0.9062432 31564 0.2372805
## 4 ZonationProxiDG 39 2.912410 0.9326721 29417 0.2211405
## 5 ZonationProxiDGvsSPP 47 3.270153 0.9527963 33873 0.2546383
## 6 ZonationSPP_ADMU 45 2.939452 0.9255980 13479 0.1013276
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3829442 0.3254818 30010.71
## 3 0.3046085 0.1612380 31473.09
## 4 0.3900471 0.2304318 33120.29
## 5 0.7125212 0.9159420 31938.35
## 6 0.2636786 0.1144068 34474.86
## [1] "Solanum agrimonifolium"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning in `[<-.factor`(`*tmp*`, list, value = 0): invalid factor level, NA
## generated
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 9 1.057363 0.5111268 6770 1.0000000
## 2 ZonationSPP 9 1.000209 0.4820185 6499 0.9599705
## 3 ZonationZV 9 1.057363 0.5111268 6770 1.0000000
## 4 ZonationProxiDG 9 1.164787 0.5433658 4053 0.5986706
## 5 ZonationProxiDGvsSPP 9 1.391910 0.6439849 2921 0.4314623
## 6 ZonationSPP_ADMU 9 1.409737 0.7053841 1427 0.2107829
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0000
## 2 0.8668002 0.9230769 152.3122
## 3 1.0000000 1.0000000 0.0000
## 4 0.8205808 1.0000000 2025.3437
## 5 0.8238686 1.0000000 3018.3414
## 6 0.3780034 0.2691606 4098.3242
## [1] "Solanum bulbocastanum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 52 2.895931 0.9203294 255385 1.00000000
## 2 ZonationSPP 44 2.813786 0.9145507 59302 0.23220628
## 3 ZonationZV 46 2.748880 0.9073250 46358 0.18152202
## 4 ZonationProxiDG 47 3.256014 0.9559018 48251 0.18893435
## 5 ZonationProxiDGvsSPP 52 3.383358 0.9599595 54560 0.21363823
## 6 ZonationSPP_ADMU 51 2.967228 0.9269684 24243 0.09492727
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3615773 0.2545251 58899.20
## 3 0.3614877 0.2142587 61659.12
## 4 0.4624091 0.3705459 65697.13
## 5 0.6646239 0.8231075 63771.30
## 6 0.2375958 0.1000987 65747.99
## [1] "Solanum cardiophyllum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 40 2.667189 0.9032222 177407 1.00000000
## 2 ZonationSPP 32 2.515864 0.8846169 35367 0.19935516
## 3 ZonationZV 33 2.402439 0.8746636 27776 0.15656654
## 4 ZonationProxiDG 35 2.862786 0.9323172 29462 0.16607011
## 5 ZonationProxiDGvsSPP 40 3.145433 0.9470430 35331 0.19915223
## 6 ZonationSPP_ADMU 36 2.616548 0.9055857 17001 0.09583049
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3013419 0.1779444 46619.35
## 3 0.2960243 0.1069763 48433.91
## 4 0.4367225 0.3299410 50134.75
## 5 0.6299695 0.6552435 48292.65
## 6 0.1963001 0.0805260 50342.81
## [1] "Solanum clarum"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning in `[<-.factor`(`*tmp*`, list, value = 0): invalid factor level, NA
## generated
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 2 0.5945425 0.4046816 142 1.0000000
## 2 ZonationSPP 2 0.5945425 0.4046816 142 1.0000000
## 3 ZonationZV 2 0.5945425 0.4046816 142 1.0000000
## 4 ZonationProxiDG 2 0.5945425 0.4046816 142 1.0000000
## 5 ZonationProxiDGvsSPP 2 0.5964028 0.4064182 141 0.9929577
## 6 ZonationSPP_ADMU 2 0.2432671 0.1233535 106 0.7464789
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00000
## 2 1.0000000 1.0000000 0.00000
## 3 1.0000000 1.0000000 0.00000
## 4 1.0000000 1.0000000 0.00000
## 5 0.9950980 0.9950980 1.00000
## 6 0.5727941 0.5727941 33.13608
## [1] "Solanum demissum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 41 2.716627 0.9041761 75146 1.0000000
## 2 ZonationSPP 37 2.651881 0.9091928 25484 0.3391265
## 3 ZonationZV 34 2.644628 0.9030586 21625 0.2877731
## 4 ZonationProxiDG 37 2.852689 0.9237084 21818 0.2903415
## 5 ZonationProxiDGvsSPP 41 3.212925 0.9516758 20913 0.2782982
## 6 ZonationSPP_ADMU 38 2.554527 0.8694884 8671 0.1153887
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4777179 0.4380398 17867.17
## 3 0.4739313 0.2830189 18932.10
## 4 0.5163942 0.5131553 19806.09
## 5 0.7205135 0.9229122 19732.26
## 6 0.2220472 0.1052632 20799.90
## [1] "Solanum ehrenbergii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 20 1.892565 0.8185686 155212 1.00000000
## 2 ZonationSPP 19 1.900733 0.7885829 22365 0.14409324
## 3 ZonationZV 17 1.913213 0.7883520 14363 0.09253795
## 4 ZonationProxiDG 16 1.903265 0.7933212 5606 0.03611834
## 5 ZonationProxiDGvsSPP 20 2.465209 0.8988849 15176 0.09777595
## 6 ZonationSPP_ADMU 19 2.099357 0.8523831 16999 0.10952117
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.2958570 0.26233027 59014.34
## 3 0.2355543 0.15871005 61711.08
## 4 0.2316873 0.05282762 64809.18
## 5 0.6122083 0.70862542 62148.55
## 6 0.3315588 0.15424616 61419.92
## [1] "Solanum endiense"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 23 2.386588 0.8841957 30525 1.00000000
## 2 ZonationSPP 22 2.309690 0.8725485 15101 0.49470925
## 3 ZonationZV 22 2.263321 0.8622362 12904 0.42273546
## 4 ZonationProxiDG 21 2.327849 0.8650801 12720 0.41670762
## 5 ZonationProxiDGvsSPP 23 2.693112 0.9210672 11909 0.39013923
## 6 ZonationSPP_ADMU 22 2.560253 0.9071083 2513 0.08232596
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.6605866 0.8047035 6600.334
## 3 0.5811393 0.7048458 7540.775
## 4 0.5638008 0.6666667 8020.490
## 5 0.7612965 0.9521277 7772.886
## 6 0.2546702 0.1052632 9687.876
## [1] "Solanum hjertingii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 24 1.983136 0.8142907 131818 1.00000000
## 2 ZonationSPP 22 1.769016 0.7478454 12505 0.09486565
## 3 ZonationZV 19 1.532524 0.6153837 11577 0.08782564
## 4 ZonationProxiDG 19 1.842831 0.7700137 6527 0.04951524
## 5 ZonationProxiDGvsSPP 24 2.630407 0.9142722 12976 0.09843876
## 6 ZonationSPP_ADMU 24 1.766248 0.7430061 34550 0.26210381
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3377097 0.11146244 52791.90
## 3 0.2892970 0.07545022 52026.81
## 4 0.2730073 0.05289662 55613.28
## 5 0.6213053 0.89842940 54038.50
## 6 0.4089636 0.30062778 41901.84
## [1] "Solanum hougasii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 42 2.561879 0.8906831 32916 1.0000000
## 2 ZonationSPP 33 2.246340 0.8403528 16326 0.4959898
## 3 ZonationZV 28 1.963906 0.7904047 12840 0.3900838
## 4 ZonationProxiDG 39 2.509226 0.8917663 14058 0.4270871
## 5 ZonationProxiDGvsSPP 42 2.952902 0.9295018 13480 0.4095273
## 6 ZonationSPP_ADMU 40 2.644349 0.9052264 5315 0.1614716
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.4129193 0.37899262 5530.504
## 3 0.2939733 0.08057739 6580.417
## 4 0.5305350 0.50779037 6869.766
## 5 0.8387422 1.00000000 7679.951
## 6 0.3193088 0.22698300 9475.605
## [1] "Solanum iopetalum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 74 3.520583 0.9574027 625697 1.0000000
## 2 ZonationSPP 67 3.368402 0.9526880 108823 0.1739228
## 3 ZonationZV 64 3.347525 0.9490911 84661 0.1353067
## 4 ZonationProxiDG 66 3.879796 0.9774429 101353 0.1619842
## 5 ZonationProxiDGvsSPP 74 3.943345 0.9781016 119581 0.1911165
## 6 ZonationSPP_ADMU 72 3.437075 0.9534673 74649 0.1193054
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.2834558 0.1056404 110994.8
## 3 0.3091095 0.1311796 115108.1
## 4 0.4455866 0.2899929 119133.3
## 5 0.5324936 0.4404880 114954.7
## 6 0.1931110 0.1041542 113849.4
## [1] "Solanum morelliforme"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 67 3.405476 0.9563704 224787 1.0000000
## 2 ZonationSPP 62 3.287403 0.9511790 72632 0.3231148
## 3 ZonationZV 60 3.257793 0.9474533 54821 0.2438798
## 4 ZonationProxiDG 61 3.577201 0.9671095 58152 0.2586982
## 5 ZonationProxiDGvsSPP 67 3.737183 0.9718922 64226 0.2857194
## 6 ZonationSPP_ADMU 66 3.431826 0.9582087 34098 0.1516903
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3931267 0.3618162 35661.46
## 3 0.3815298 0.2128703 39155.03
## 4 0.4955559 0.3865954 39769.54
## 5 0.6577951 0.7232290 37737.95
## 6 0.2555170 0.1313444 40938.41
## [1] "Solanum oxycarpum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 57 3.120579 0.9403663 113122 1.0000000
## 2 ZonationSPP 51 3.121597 0.9448765 32034 0.2831810
## 3 ZonationZV 49 3.021003 0.9329900 26581 0.2349764
## 4 ZonationProxiDG 50 3.141970 0.9481371 36583 0.3233942
## 5 ZonationProxiDGvsSPP 57 3.418139 0.9591911 35173 0.3109298
## 6 ZonationSPP_ADMU 55 3.002490 0.9317062 14845 0.1312300
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4178544 0.3596661 22612.19
## 3 0.4259462 0.3317850 24117.20
## 4 0.5034059 0.3958293 21636.61
## 5 0.7017588 0.9245902 21462.00
## 6 0.2885599 0.1199206 24180.30
## [1] "Solanum pinnatisectum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 26 1.889198 0.7899732 71051 1.00000000
## 2 ZonationSPP 24 1.673820 0.7151927 16839 0.23699878
## 3 ZonationZV 17 1.424646 0.6275403 11642 0.16385413
## 4 ZonationProxiDG 20 1.869874 0.7615327 5225 0.07353873
## 5 ZonationProxiDGvsSPP 26 2.541803 0.8967744 9828 0.13832318
## 6 ZonationSPP_ADMU 25 2.253343 0.8612029 8962 0.12613475
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4043657 0.32832435 25050.91
## 3 0.2651696 0.05443078 26526.48
## 4 0.3392043 0.12387198 31346.53
## 5 0.7234363 1.00000000 29965.15
## 6 0.4327556 0.26533692 29461.69
## [1] "Solanum polyadenium"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 42 2.753485 0.9055644 141071 1.00000000
## 2 ZonationSPP 40 2.771399 0.9125973 35904 0.25451014
## 3 ZonationZV 39 2.637865 0.8912130 27120 0.19224362
## 4 ZonationProxiDG 40 3.086840 0.9474208 35802 0.25378710
## 5 ZonationProxiDGvsSPP 42 3.240832 0.9527411 34009 0.24107719
## 6 ZonationSPP_ADMU 41 2.873858 0.9187045 13537 0.09595877
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4221162 0.3528161 36151.77
## 3 0.3753991 0.1801948 37581.43
## 4 0.5589425 0.4512204 37891.21
## 5 0.6542855 0.7227213 37468.72
## 6 0.2260435 0.1056839 39572.67
## [1] "Solanum schenckii"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 57 3.120579 0.9403663 113122 1.0000000
## 2 ZonationSPP 51 3.121597 0.9448765 32034 0.2831810
## 3 ZonationZV 49 3.021003 0.9329900 26581 0.2349764
## 4 ZonationProxiDG 50 3.141970 0.9481371 36583 0.3233942
## 5 ZonationProxiDGvsSPP 57 3.418139 0.9591911 35173 0.3109298
## 6 ZonationSPP_ADMU 55 3.002490 0.9317062 14845 0.1312300
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4178544 0.3596661 22612.19
## 3 0.4259462 0.3317850 24117.20
## 4 0.5034059 0.3958293 21636.61
## 5 0.7017588 0.9245902 21462.00
## 6 0.2885599 0.1199206 24180.30
## [1] "Solanum stenophyllidium"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 38 2.531380 0.8740448 410338 1.00000000
## 2 ZonationSPP 37 2.748226 0.9010085 59609 0.14526805
## 3 ZonationZV 34 2.665782 0.8998292 42023 0.10241070
## 4 ZonationProxiDG 34 3.069882 0.9438150 29074 0.07085378
## 5 ZonationProxiDGvsSPP 38 3.288737 0.9544297 46054 0.11223430
## 6 ZonationSPP_ADMU 38 2.899663 0.9148814 38808 0.09457569
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.3195993 0.2389171 134967.9
## 3 0.2919286 0.1360328 138741.1
## 4 0.2686494 0.1118076 142067.6
## 5 0.4765736 0.3883503 138338.4
## 6 0.2507216 0.1383266 134996.3
## [1] "Solanum stoloniferum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 64 2.859737 0.9039178 423750 1.00000000
## 2 ZonationSPP 59 3.213948 0.9441828 74180 0.17505605
## 3 ZonationZV 57 3.083438 0.9353553 61408 0.14491563
## 4 ZonationProxiDG 61 3.482606 0.9642901 61693 0.14558820
## 5 ZonationProxiDGvsSPP 64 3.610555 0.9658285 67792 0.15998112
## 6 ZonationSPP_ADMU 61 2.950833 0.8995954 39494 0.09320118
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.4126395 0.3286560 118946.0
## 3 0.4207277 0.2456271 121368.0
## 4 0.5084453 0.3824306 124974.2
## 5 0.6480002 0.7448937 121635.4
## 6 0.2050519 0.1028464 119249.9
## [1] "Solanum trifidum"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 20 1.626306 0.7055233 12979 1.0000000
## 2 ZonationSPP 20 1.557363 0.6841304 10722 0.8261037
## 3 ZonationZV 19 1.505558 0.6653134 10807 0.8326527
## 4 ZonationProxiDG 16 1.437178 0.7156430 4415 0.3401649
## 5 ZonationProxiDGvsSPP 20 2.067924 0.8333141 5264 0.4055782
## 6 ZonationSPP_ADMU 20 2.072197 0.8338334 2336 0.1799830
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.7910024 0.8635383 1073.304
## 3 0.7270250 0.8214039 924.475
## 4 0.4445383 0.2930125 5075.210
## 5 0.8595371 1.0000000 5041.791
## 6 0.5414972 0.5263158 6171.470
## [1] "Solanum verrucosum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 50 2.963146 0.9239265 153449 1.0000000
## 2 ZonationSPP 47 3.032051 0.9375850 44562 0.2904027
## 3 ZonationZV 44 2.890664 0.9214474 32635 0.2126765
## 4 ZonationProxiDG 46 3.221770 0.9539480 41909 0.2731135
## 5 ZonationProxiDGvsSPP 50 3.423340 0.9609211 40664 0.2650001
## 6 ZonationSPP_ADMU 49 3.142950 0.9394720 16423 0.1070258
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4335923 0.3606979 35261.93
## 3 0.3754678 0.1752090 37358.90
## 4 0.4893495 0.3804306 37370.57
## 5 0.6796312 0.8142676 35849.87
## 6 0.2597468 0.1236304 38593.78
## [1] "Tripsacum lanceolatum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 29 2.399457 0.8839525 487983 1.00000000
## 2 ZonationSPP 25 2.440979 0.8926751 40642 0.08328569
## 3 ZonationZV 23 2.475604 0.8855269 35271 0.07227916
## 4 ZonationProxiDG 25 2.747578 0.9255746 28388 0.05817416
## 5 ZonationProxiDGvsSPP 29 2.894542 0.9339884 38432 0.07875684
## 6 ZonationSPP_ADMU 27 2.303420 0.8657728 55960 0.11467613
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0
## 2 0.1274509 0.08000000 154167.6
## 3 0.1752670 0.04299065 158159.9
## 4 0.2462404 0.08908507 159868.4
## 5 0.4668094 0.26913403 157438.0
## 6 0.1656024 0.10001567 146781.7
## [1] "Tripsacum lolium"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 30 2.390241 0.8636495 58905 1.0000000
## 2 ZonationSPP 29 2.586499 0.9049385 16504 0.2801800
## 3 ZonationZV 25 2.171586 0.8063723 20074 0.3407860
## 4 ZonationProxiDG 23 2.647485 0.9046124 11633 0.1974875
## 5 ZonationProxiDGvsSPP 30 3.033130 0.9399183 13983 0.2373822
## 6 ZonationSPP_ADMU 29 2.560523 0.8897144 12119 0.2057381
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.4820717 0.5140761 18387.41
## 3 0.5041854 0.5076978 14655.10
## 4 0.4208547 0.2570897 18870.21
## 5 0.7033220 1.0000000 18852.07
## 6 0.3279069 0.2188234 18020.16
## [1] "Tripsacum pilosum"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 23 1.237867 0.4932552 59236 1.0000000
## 2 ZonationSPP 19 1.075176 0.4570007 15304 0.2583564
## 3 ZonationZV 15 1.096916 0.4672058 11546 0.1949153
## 4 ZonationProxiDG 18 1.574254 0.7316751 3777 0.0637619
## 5 ZonationProxiDGvsSPP 23 2.773843 0.9283746 7514 0.1268485
## 6 ZonationSPP_ADMU 23 1.585901 0.6115076 8061 0.1360828
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1901713 0.10370370 30919.88
## 3 0.1802272 0.03778338 33785.63
## 4 0.1226471 0.04347826 40611.98
## 5 0.7838488 0.95454545 40955.20
## 6 0.3747245 0.23776224 37180.96
## [1] "Vanilla odorata"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 39 2.687295 0.9065409 260397 1.0000000
## 2 ZonationSPP 38 2.698062 0.9111430 35487 0.1362804
## 3 ZonationZV 36 2.469518 0.8793259 46569 0.1788385
## 4 ZonationProxiDG 37 3.078601 0.9468256 39610 0.1521139
## 5 ZonationProxiDGvsSPP 39 3.205604 0.9524349 35331 0.1356813
## 6 ZonationSPP_ADMU 37 2.695769 0.9120130 27689 0.1063338
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.3244239 0.2014134 73852.19
## 3 0.4794115 0.4097289 70464.33
## 4 0.5669558 0.5819996 74305.04
## 5 0.5680682 0.4296546 73825.83
## 6 0.1614414 0.1002571 71516.24
## [1] "Vanilla pompona"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 65 3.398393 0.9558519 352684 1.0000000
## 2 ZonationSPP 57 3.088509 0.9339249 46170 0.1309104
## 3 ZonationZV 49 2.729682 0.8905552 41213 0.1168553
## 4 ZonationProxiDG 57 3.585752 0.9674999 62284 0.1766000
## 5 ZonationProxiDGvsSPP 65 3.764570 0.9720099 68889 0.1953278
## 6 ZonationSPP_ADMU 61 3.270494 0.9489448 36813 0.1043796
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1729398 0.08117099 66119.87
## 3 0.2205343 0.02128477 67014.78
## 4 0.3989094 0.26957494 66387.68
## 5 0.5530598 0.44746647 64601.05
## 6 0.1233682 0.10144928 66447.57
## [1] "Zea diploperennis"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 11 1.740161 0.7973727 5209 1.0000000
## 2 ZonationSPP 11 1.738539 0.7967795 5194 0.9971204
## 3 ZonationZV 11 1.740161 0.7973727 5209 1.0000000
## 4 ZonationProxiDG 9 1.567675 0.7359125 2860 0.5490497
## 5 ZonationProxiDGvsSPP 11 1.896909 0.8407423 2891 0.5550010
## 6 ZonationSPP_ADMU 11 1.635522 0.7656157 3674 0.7053177
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.9974174 1.0000000 15.000
## 3 1.0000000 1.0000000 0.000
## 4 0.5040266 0.3333333 1185.850
## 5 0.8162662 1.0000000 1302.132
## 6 0.7739102 1.0000000 905.422
## [1] "Zea luxurians"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 11 1.658002 0.7402961 4128 1.0000000
## 2 ZonationSPP 11 1.486063 0.6908849 3039 0.7361919
## 3 ZonationZV 11 1.658002 0.7402961 4128 1.0000000
## 4 ZonationProxiDG 10 1.661189 0.7670160 1908 0.4622093
## 5 ZonationProxiDGvsSPP 11 2.005915 0.8463959 1898 0.4597868
## 6 ZonationSPP_ADMU 11 1.404470 0.6527060 2980 0.7218992
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.0000
## 2 0.6944832 0.8204593 517.7828
## 3 1.0000000 1.0000000 0.0000
## 4 0.6358291 0.7866109 1258.5762
## 5 0.7835687 0.8901099 1447.8349
## 6 0.6205418 0.7594937 576.3280
## [1] "Zea mays huehuetenango"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning in `[<-.factor`(`*tmp*`, list, value = 0): invalid factor level, NA
## generated
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 1 1.791759 0.8333333 30 1
## 2 ZonationSPP 1 1.791759 0.8333333 30 1
## 3 ZonationZV 1 1.791759 0.8333333 30 1
## 4 ZonationProxiDG 1 1.791759 0.8333333 30 1
## 5 ZonationProxiDGvsSPP 1 1.791759 0.8333333 30 1
## 6 ZonationSPP_ADMU 1 1.791759 0.8333333 30 1
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0
## 2 1 1 0
## 3 1 1 0
## 4 1 1 0
## 5 1 1 0
## 6 1 1 0
## [1] "Zea mays mexicana race chalco"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 16 1.796393 0.7727278 29313 1.0000000
## 2 ZonationSPP 16 1.893711 0.8210462 12776 0.4358476
## 3 ZonationZV 14 1.902894 0.8159353 11639 0.3970593
## 4 ZonationProxiDG 13 1.942758 0.8421079 8440 0.2879269
## 5 ZonationProxiDGvsSPP 16 2.235072 0.8674899 6747 0.2301709
## 6 ZonationSPP_ADMU 15 1.900222 0.7834097 4953 0.1689694
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.5353645 0.5358055 9103.326
## 3 0.5654068 0.4906649 9432.490
## 4 0.4750734 0.3349372 11534.034
## 5 0.6711319 0.7943811 12240.781
## 6 0.4101092 0.1823081 11750.515
## [1] "Zea mays mexicana race durango"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 11 1.377412 0.6852968 5916 1.0000000
## 2 ZonationSPP 11 1.377412 0.6852968 5916 1.0000000
## 3 ZonationZV 11 1.377412 0.6852968 5916 1.0000000
## 4 ZonationProxiDG 9 1.289958 0.6760784 2949 0.4984787
## 5 ZonationProxiDGvsSPP 11 1.724864 0.7940760 1859 0.3142326
## 6 ZonationSPP_ADMU 11 1.377412 0.6852968 5916 1.0000000
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 1.0000000 1.0000000 0.000
## 3 1.0000000 1.0000000 0.000
## 4 0.4934707 0.4462575 1933.384
## 5 0.7785520 1.0000000 2619.920
## 6 1.0000000 1.0000000 0.000
## [1] "Zea mays mexicana race mesa central"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 8 1.0718451 0.5516889 25070 1.0000000
## 2 ZonationSPP 8 0.9646295 0.5684022 12667 0.5052653
## 3 ZonationZV 8 1.0117502 0.5430805 11634 0.4640606
## 4 ZonationProxiDG 5 0.7940207 0.4313034 2946 0.1175110
## 5 ZonationProxiDGvsSPP 8 1.6746421 0.7492235 3803 0.1516953
## 6 ZonationSPP_ADMU 8 1.5477797 0.7329374 4434 0.1768648
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 0.3434767 0.2568139 8751.553
## 3 0.4037497 0.3925552 8998.174
## 4 0.2035213 0.1679049 15974.888
## 5 0.6109987 0.5787860 15661.150
## 6 0.5856070 0.6232602 14910.841
## [1] "Zea mays mexicana race nobogame"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 10 1.643579 0.7421844 6478 1.0000000
## 2 ZonationSPP 10 1.643579 0.7421844 6478 1.0000000
## 3 ZonationZV 10 1.643579 0.7421844 6478 1.0000000
## 4 ZonationProxiDG 8 1.614699 0.7396879 3024 0.4668107
## 5 ZonationProxiDGvsSPP 10 2.025050 0.8583957 2597 0.4008953
## 6 ZonationSPP_ADMU 10 1.593577 0.7292426 6298 0.9722136
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.000
## 2 1.0000000 1.0000000 0.000
## 3 1.0000000 1.0000000 0.000
## 4 0.4864589 0.4135016 1861.559
## 5 0.7582636 1.0000000 2510.213
## 6 0.9421222 1.0000000 180.000
## [1] "Zea mays parviglumis"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 28 2.396557 0.8596622 97795 1.0000000
## 2 ZonationSPP 21 1.929267 0.7619650 18212 0.1862263
## 3 ZonationZV 20 2.054828 0.8368529 10611 0.1085025
## 4 ZonationProxiDG 21 2.539778 0.9073261 20615 0.2107981
## 5 ZonationProxiDGvsSPP 28 2.861619 0.9307636 22104 0.2260238
## 6 ZonationSPP_ADMU 26 2.304792 0.8605150 12891 0.1318166
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00
## 2 0.1333408 0.07903476 28406.32
## 3 0.1204571 0.01475813 33523.39
## 4 0.2854704 0.19609541 32033.15
## 5 0.5942399 0.63641397 31550.16
## 6 0.2090813 0.15168930 32057.81
## [1] "Zea perennis"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining factors with different levels,
## coercing to character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Joining, by = "ProxiDivGen"
## Warning: Column `ProxiDivGen` joining character vector and factor, coercing
## into character vector
## Warning: Column `Solution` joining factor and character vector, coercing
## into character vector
## Warning: Column `Solution` joining character vector and factor, coercing
## into character vector
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 8 1.2373179 0.6532934 3731 1.0000000
## 2 ZonationSPP 8 1.2065106 0.6442362 3658 0.9804342
## 3 ZonationZV 8 1.2373179 0.6532934 3731 1.0000000
## 4 ZonationProxiDG 7 0.9435266 0.5595906 2814 0.7542214
## 5 ZonationProxiDGvsSPP 8 1.4974987 0.7429621 1634 0.4379523
## 6 ZonationSPP_ADMU 7 1.0242097 0.5248310 2353 0.6306620
## mean.prop median.prop Dist.to.Optimun
## 1 NA NA 0.00000
## 2 0.9327818 0.9989605 57.57604
## 3 1.0000000 1.0000000 0.00000
## 4 0.6220792 0.8694154 469.28989
## 5 0.8026951 1.0000000 1408.82398
## 6 0.5147418 0.4162162 951.56923
##### Analyse results together
head(sol_tidy_spp)
## ProxiDivGen Solution Freq sp
## 1 1 ENM_sp 1883 Capsicum annuum glabriusculum
## 2 10 ENM_sp 5667 Capsicum annuum glabriusculum
## 3 11 ENM_sp 4190 Capsicum annuum glabriusculum
## 4 12 ENM_sp 15561 Capsicum annuum glabriusculum
## 5 13 ENM_sp 4059 Capsicum annuum glabriusculum
## 6 14 ENM_sp 3108 Capsicum annuum glabriusculum
head(sol_prop_spp)
## ProxiDivGen ENM_sp Solution Proportion_ProxiDG
## 1 1 1883 ZonationSPP 0.01593202
## 2 10 5667 ZonationSPP 0.04252691
## 3 11 4190 ZonationSPP 0.09713604
## 4 12 15561 ZonationSPP 0.14394962
## 5 13 4059 ZonationSPP 0.49913772
## 6 14 3108 ZonationSPP 0.40926641
## sp
## 1 Capsicum annuum glabriusculum
## 2 Capsicum annuum glabriusculum
## 3 Capsicum annuum glabriusculum
## 4 Capsicum annuum glabriusculum
## 5 Capsicum annuum glabriusculum
## 6 Capsicum annuum glabriusculum
head(sols_summary_spp)
## Solution Richness shannon simpson Area Prop_to_AreaSP
## 1 ENM_sp 64 3.216956 0.9341559 473887 1.0000000
## 2 ZonationSPP 57 3.183124 0.9426602 57246 0.1208010
## 3 ZonationZV 56 2.977902 0.9277750 61156 0.1290519
## 4 ZonationProxiDG 59 3.601769 0.9690824 70781 0.1493626
## 5 ZonationProxiDGvsSPP 64 3.771706 0.9735631 65715 0.1386723
## 6 ZonationSPP_ADMU 61 3.202893 0.9334670 51178 0.1079962
## mean.prop median.prop Dist.to.Optimun sp
## 1 NA NA 0.0 Capsicum annuum glabriusculum
## 2 0.2337136 0.10629199 113743.9 Capsicum annuum glabriusculum
## 3 0.2528522 0.09174691 113795.0 Capsicum annuum glabriusculum
## 4 0.3699246 0.20990318 113614.4 Capsicum annuum glabriusculum
## 5 0.5070655 0.36755490 113899.3 Capsicum annuum glabriusculum
## 6 0.1663593 0.10062029 108847.3 Capsicum annuum glabriusculum
# write results
write.csv(sol_tidy_spp, "../data/comparations_output/sol_tidy_spp.txt", row.names=FALSE, quote = FALSE)
write.csv(sol_prop_spp, "../data/comparations_output/sol_prop_spp.txt", row.names=FALSE, quote = FALSE)
write.csv(sols_summary_spp, "../data/comparations_output/sols_summary_spp.txt", row.names=FALSE, quote = FALSE)
### Plots
## Violin plots
# dist to optimun
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Solution, y=Dist.to.Optimun, color=Solution)) + geom_violin() + geom_jitter(size = 0.3) +
stat_summary(fun.y=mean, geom="point", color="red") +
theme(axis.text.x = element_blank()) +
scale_y_continuous(name="Distance to Optimun")
# Simpson
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Solution, y=simpson, color=Solution)) + geom_violin() + geom_jitter(size = 0.3) +
stat_summary(fun.y=mean, geom="point", color="red") +
theme(axis.text.x = element_blank()) +
scale_y_continuous(name="Simpson Index")
# Area sp conserved
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Solution, y=Prop_to_AreaSP, color=Solution)) + geom_violin() + geom_jitter(size = 0.3) +
stat_summary(fun.y=mean, geom="point", color="red") +
theme(axis.text.x = element_blank()) +
scale_y_continuous(name="Proportion of distribution of the sp conserved")
# Mean prop area proxies by sp ponserved
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Solution, y=mean.prop, color=Solution)) + geom_violin() + geom_jitter(size = 0.3) +
stat_summary(fun.y=mean, geom="point", color="red") +
theme(axis.text.x = element_blank()) +
scale_y_continuous(name="Mean proportion of the area of each proxy conserved by sp")
# Median prop area proxies by sp ponserved
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Solution, y=median.prop, color=Solution)) + geom_violin() + geom_jitter(size = 0.3) +
stat_summary(fun.y=mean, geom="point", color="red") +
theme(axis.text.x = element_blank()) +
scale_y_continuous(name="Median proportion of the area of each proxy conserved by sp")
# Median and mean together
filter(sols_summary_spp, Solution!="ENM_sp") %>%
gather(., SummaryStat, value, -Solution, -c(Richness:Prop_to_AreaSP), -Dist.to.Optimun, -sp) %>%
ggplot(., aes(x=interaction(SummaryStat, Solution), y=value, color=SummaryStat)) + geom_violin() + geom_jitter(size = 0.1) +
theme(axis.text.x = element_text(angle = 45, hjust = 1))
# Proportion of the distribution of the sp conserved vs MEAN proportion of each proxy conserved by sp
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Prop_to_AreaSP, y=mean.prop, color=Solution)) + geom_point() +
scale_x_continuous(name="Proportion of distribution of the sp conserved") +
scale_y_continuous(name="Mean proportion of the area of each proxy conserved by sp")
# Proportion of the distribution of the sp conserved vs MEADIAN proportion of each proxy conserved by sp
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Prop_to_AreaSP, y=median.prop, color=Solution)) + geom_point() +
scale_x_continuous(name="Proportion of distribution of the sp conserved") +
scale_y_continuous(name="Median proportion of the area of each proxy conserved by sp")
## with regression lines
filter(sols_summary_spp, Solution!="ENM_sp") %>%
ggplot(., aes(x=Prop_to_AreaSP, y=mean.prop, color=Solution)) + geom_point(size=0.7) +
scale_x_continuous(name="Proportion of distribution of the sp conserved") +
scale_y_continuous(name="Mean proportion of the area of each proxy conserved by sp") + geom_smooth(method=loess, aes(fill=Solution))
